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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 18-45880111-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=45880111&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "18",
"pos": 45880111,
"ref": "A",
"alt": "G",
"effect": "synonymous_variant",
"transcript": "NM_020964.3",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "NM_020964.3",
"protein_id": "NP_066015.2",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2579,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7740,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000282041.11",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_020964.3"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "ENST00000282041.11",
"protein_id": "ENSP00000282041.4",
"transcript_support_level": 1,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2579,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7740,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_020964.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000282041.11"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 33,
"exon_rank_end": null,
"exon_count": 45,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "n.*1371T>C",
"hgvs_p": null,
"transcript": "ENST00000587884.2",
"protein_id": "ENSP00000466990.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000587884.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "n.*226T>C",
"hgvs_p": null,
"transcript": "ENST00000590884.6",
"protein_id": "ENSP00000466403.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000590884.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "n.5631T>C",
"hgvs_p": null,
"transcript": "ENST00000592272.6",
"protein_id": "ENSP00000467464.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000592272.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 33,
"exon_rank_end": null,
"exon_count": 45,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "n.*1371T>C",
"hgvs_p": null,
"transcript": "ENST00000587884.2",
"protein_id": "ENSP00000466990.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000587884.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "n.*226T>C",
"hgvs_p": null,
"transcript": "ENST00000590884.6",
"protein_id": "ENSP00000466403.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000590884.6"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "NM_001410859.1",
"protein_id": "NP_001397788.1",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2578,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7737,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001410859.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "ENST00000696489.1",
"protein_id": "ENSP00000512660.1",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2578,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7737,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000696489.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "NM_001410858.1",
"protein_id": "NP_001397787.1",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2544,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7635,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001410858.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "ENST00000696483.1",
"protein_id": "ENSP00000512657.1",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2544,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7635,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000696483.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5490T>C",
"hgvs_p": "p.Leu1830Leu",
"transcript": "ENST00000936086.1",
"protein_id": "ENSP00000606145.1",
"transcript_support_level": null,
"aa_start": 1830,
"aa_end": null,
"aa_length": 2532,
"cds_start": 5490,
"cds_end": null,
"cds_length": 7599,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000936086.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "ENST00000696484.1",
"protein_id": "ENSP00000512658.1",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2492,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7479,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000696484.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "ENST00000696490.1",
"protein_id": "ENSP00000512661.1",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2482,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7449,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000696490.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5043T>C",
"hgvs_p": "p.Leu1681Leu",
"transcript": "ENST00000869408.1",
"protein_id": "ENSP00000539467.1",
"transcript_support_level": null,
"aa_start": 1681,
"aa_end": null,
"aa_length": 2383,
"cds_start": 5043,
"cds_end": null,
"cds_length": 7152,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869408.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5658T>C",
"hgvs_p": "p.Leu1886Leu",
"transcript": "XM_047437698.1",
"protein_id": "XP_047293654.1",
"transcript_support_level": null,
"aa_start": 1886,
"aa_end": null,
"aa_length": 2598,
"cds_start": 5658,
"cds_end": null,
"cds_length": 7797,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437698.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5658T>C",
"hgvs_p": "p.Leu1886Leu",
"transcript": "XM_047437699.1",
"protein_id": "XP_047293655.1",
"transcript_support_level": null,
"aa_start": 1886,
"aa_end": null,
"aa_length": 2597,
"cds_start": 5658,
"cds_end": null,
"cds_length": 7794,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437699.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "XM_011526122.2",
"protein_id": "XP_011524424.1",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2589,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7770,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011526122.2"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5631T>C",
"hgvs_p": "p.Leu1877Leu",
"transcript": "XM_017025889.2",
"protein_id": "XP_016881378.1",
"transcript_support_level": null,
"aa_start": 1877,
"aa_end": null,
"aa_length": 2588,
"cds_start": 5631,
"cds_end": null,
"cds_length": 7767,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017025889.2"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5658T>C",
"hgvs_p": "p.Leu1886Leu",
"transcript": "XM_047437700.1",
"protein_id": "XP_047293656.1",
"transcript_support_level": null,
"aa_start": 1886,
"aa_end": null,
"aa_length": 2588,
"cds_start": 5658,
"cds_end": null,
"cds_length": 7767,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437700.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5658T>C",
"hgvs_p": "p.Leu1886Leu",
"transcript": "XM_047437701.1",
"protein_id": "XP_047293657.1",
"transcript_support_level": null,
"aa_start": 1886,
"aa_end": null,
"aa_length": 2587,
"cds_start": 5658,
"cds_end": null,
"cds_length": 7764,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437701.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EPG5",
"gene_hgnc_id": 29331,
"hgvs_c": "c.5658T>C",
"hgvs_p": "p.Leu1886Leu",
"transcript": "XM_047437703.1",
"protein_id": "XP_047293659.1",
"transcript_support_level": null,
"aa_start": 1886,
"aa_end": null,
"aa_length": 2553,
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}