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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 18-50273799-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=50273799&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "18",
      "pos": 50273799,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_001323942.2",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1211G>A",
          "hgvs_p": "p.Arg404His",
          "transcript": "NM_015846.4",
          "protein_id": "NP_056671.2",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 605,
          "cds_start": 1211,
          "cds_end": null,
          "cds_length": 1818,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000269468.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_015846.4"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1211G>A",
          "hgvs_p": "p.Arg404His",
          "transcript": "ENST00000269468.10",
          "protein_id": "ENSP00000269468.5",
          "transcript_support_level": 5,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 605,
          "cds_start": 1211,
          "cds_end": null,
          "cds_length": 1818,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_015846.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000269468.10"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1211G>A",
          "hgvs_p": "p.Arg404His",
          "transcript": "ENST00000590208.5",
          "protein_id": "ENSP00000468785.1",
          "transcript_support_level": 1,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 655,
          "cds_start": 1211,
          "cds_end": null,
          "cds_length": 1968,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000590208.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1142G>A",
          "hgvs_p": "p.Arg381His",
          "transcript": "ENST00000588937.5",
          "protein_id": "ENSP00000467763.1",
          "transcript_support_level": 1,
          "aa_start": 381,
          "aa_end": null,
          "aa_length": 586,
          "cds_start": 1142,
          "cds_end": null,
          "cds_length": 1761,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000588937.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1061G>A",
          "hgvs_p": "p.Arg354His",
          "transcript": "ENST00000585672.5",
          "protein_id": "ENSP00000466092.1",
          "transcript_support_level": 1,
          "aa_start": 354,
          "aa_end": null,
          "aa_length": 567,
          "cds_start": 1061,
          "cds_end": null,
          "cds_length": 1704,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000585672.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1064G>A",
          "hgvs_p": "p.Arg355His",
          "transcript": "ENST00000353909.7",
          "protein_id": "ENSP00000269469.5",
          "transcript_support_level": 1,
          "aa_start": 355,
          "aa_end": null,
          "aa_length": 556,
          "cds_start": 1064,
          "cds_end": null,
          "cds_length": 1671,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000353909.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1211G>A",
          "hgvs_p": "p.Arg404His",
          "transcript": "ENST00000339998.10",
          "protein_id": "ENSP00000339546.5",
          "transcript_support_level": 1,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 550,
          "cds_start": 1211,
          "cds_end": null,
          "cds_length": 1653,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000339998.10"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1043G>A",
          "hgvs_p": "p.Arg348His",
          "transcript": "ENST00000347968.7",
          "protein_id": "ENSP00000285102.5",
          "transcript_support_level": 1,
          "aa_start": 348,
          "aa_end": null,
          "aa_length": 549,
          "cds_start": 1043,
          "cds_end": null,
          "cds_length": 1650,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000347968.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1142G>A",
          "hgvs_p": "p.Arg381His",
          "transcript": "ENST00000591535.5",
          "protein_id": "ENSP00000465923.1",
          "transcript_support_level": 1,
          "aa_start": 381,
          "aa_end": null,
          "aa_length": 536,
          "cds_start": 1142,
          "cds_end": null,
          "cds_length": 1611,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000591535.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1043G>A",
          "hgvs_p": "p.Arg348His",
          "transcript": "ENST00000398488.5",
          "protein_id": "ENSP00000381502.1",
          "transcript_support_level": 1,
          "aa_start": 348,
          "aa_end": null,
          "aa_length": 503,
          "cds_start": 1043,
          "cds_end": null,
          "cds_length": 1512,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000398488.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.743G>A",
          "hgvs_p": "p.Arg248His",
          "transcript": "ENST00000592060.5",
          "protein_id": "ENSP00000467606.1",
          "transcript_support_level": 1,
          "aa_start": 248,
          "aa_end": null,
          "aa_length": 415,
          "cds_start": 743,
          "cds_end": null,
          "cds_length": 1248,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000592060.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1286G>A",
          "hgvs_p": "p.Arg429His",
          "transcript": "NM_001323942.2",
          "protein_id": "NP_001310871.1",
          "transcript_support_level": null,
          "aa_start": 429,
          "aa_end": null,
          "aa_length": 680,
          "cds_start": 1286,
          "cds_end": null,
          "cds_length": 2043,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001323942.2"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1286G>A",
          "hgvs_p": "p.Arg429His",
          "transcript": "ENST00000705655.1",
          "protein_id": "ENSP00000516153.1",
          "transcript_support_level": null,
          "aa_start": 429,
          "aa_end": null,
          "aa_length": 680,
          "cds_start": 1286,
          "cds_end": null,
          "cds_length": 2043,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000705655.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1286G>A",
          "hgvs_p": "p.Arg429His",
          "transcript": "NM_001323947.2",
          "protein_id": "NP_001310876.1",
          "transcript_support_level": null,
          "aa_start": 429,
          "aa_end": null,
          "aa_length": 665,
          "cds_start": 1286,
          "cds_end": null,
          "cds_length": 1998,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001323947.2"
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 13,
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          "exon_count": 17,
          "intron_rank": null,
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          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1286G>A",
          "hgvs_p": "p.Arg429His",
          "transcript": "NM_001388145.1",
          "protein_id": "NP_001375074.1",
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          "aa_end": null,
          "aa_length": 662,
          "cds_start": 1286,
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          "cds_length": 1989,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001388145.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1217G>A",
          "hgvs_p": "p.Arg406His",
          "transcript": "NM_001399879.1",
          "protein_id": "NP_001386808.1",
          "transcript_support_level": null,
          "aa_start": 406,
          "aa_end": null,
          "aa_length": 657,
          "cds_start": 1217,
          "cds_end": null,
          "cds_length": 1974,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001399879.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1364G>A",
          "hgvs_p": "p.Arg455His",
          "transcript": "NM_001399880.1",
          "protein_id": "NP_001386809.1",
          "transcript_support_level": null,
          "aa_start": 455,
          "aa_end": null,
          "aa_length": 656,
          "cds_start": 1364,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001399880.1"
        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1211G>A",
          "hgvs_p": "p.Arg404His",
          "transcript": "NM_001204136.2",
          "protein_id": "NP_001191065.1",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 655,
          "cds_start": 1211,
          "cds_end": null,
          "cds_length": 1968,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001204136.2"
        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1208G>A",
          "hgvs_p": "p.Arg403His",
          "transcript": "NM_001399881.1",
          "protein_id": "NP_001386810.1",
          "transcript_support_level": null,
          "aa_start": 403,
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          "aa_length": 654,
          "cds_start": 1208,
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          "cds_length": 1965,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001399881.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MBD1",
          "gene_hgnc_id": 6916,
          "hgvs_c": "c.1211G>A",
          "hgvs_p": "p.Arg404His",
          "transcript": "NM_001399882.1",
          "protein_id": "NP_001386811.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 651,
          "cds_start": 1211,
          "cds_end": null,
          "cds_length": 1956,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001399882.1"
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      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
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  "message": null
}