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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 18-62045901-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=62045901&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "18",
"pos": 62045901,
"ref": "C",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_001438896.1",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2751G>T",
"hgvs_p": "p.Thr917Thr",
"transcript": "NM_176787.5",
"protein_id": "NP_789744.1",
"transcript_support_level": null,
"aa_start": 917,
"aa_end": null,
"aa_length": 931,
"cds_start": 2751,
"cds_end": null,
"cds_length": 2796,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000640252.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_176787.5"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2751G>T",
"hgvs_p": "p.Thr917Thr",
"transcript": "ENST00000640252.2",
"protein_id": "ENSP00000492233.1",
"transcript_support_level": 1,
"aa_start": 917,
"aa_end": null,
"aa_length": 931,
"cds_start": 2751,
"cds_end": null,
"cds_length": 2796,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_176787.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000640252.2"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2751G>T",
"hgvs_p": "p.Thr917Thr",
"transcript": "ENST00000400334.7",
"protein_id": "ENSP00000383188.2",
"transcript_support_level": 1,
"aa_start": 917,
"aa_end": null,
"aa_length": 931,
"cds_start": 2751,
"cds_end": null,
"cds_length": 2796,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000400334.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "n.*719G>T",
"hgvs_p": null,
"transcript": "ENST00000638424.1",
"protein_id": "ENSP00000491963.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000638424.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "n.*719G>T",
"hgvs_p": null,
"transcript": "ENST00000638424.1",
"protein_id": "ENSP00000491963.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000638424.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2952G>T",
"hgvs_p": "p.Thr984Thr",
"transcript": "ENST00000858614.1",
"protein_id": "ENSP00000528673.1",
"transcript_support_level": null,
"aa_start": 984,
"aa_end": null,
"aa_length": 998,
"cds_start": 2952,
"cds_end": null,
"cds_length": 2997,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858614.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2874G>T",
"hgvs_p": "p.Thr958Thr",
"transcript": "ENST00000858622.1",
"protein_id": "ENSP00000528681.1",
"transcript_support_level": null,
"aa_start": 958,
"aa_end": null,
"aa_length": 972,
"cds_start": 2874,
"cds_end": null,
"cds_length": 2919,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858622.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2868G>T",
"hgvs_p": "p.Thr956Thr",
"transcript": "NM_001438896.1",
"protein_id": "NP_001425825.1",
"transcript_support_level": null,
"aa_start": 956,
"aa_end": null,
"aa_length": 970,
"cds_start": 2868,
"cds_end": null,
"cds_length": 2913,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438896.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2868G>T",
"hgvs_p": "p.Thr956Thr",
"transcript": "ENST00000639902.1",
"protein_id": "ENSP00000490965.1",
"transcript_support_level": 5,
"aa_start": 956,
"aa_end": null,
"aa_length": 970,
"cds_start": 2868,
"cds_end": null,
"cds_length": 2913,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000639902.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2868G>T",
"hgvs_p": "p.Thr956Thr",
"transcript": "ENST00000640540.1",
"protein_id": "ENSP00000491620.1",
"transcript_support_level": 5,
"aa_start": 956,
"aa_end": null,
"aa_length": 970,
"cds_start": 2868,
"cds_end": null,
"cds_length": 2913,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000640540.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2868G>T",
"hgvs_p": "p.Thr956Thr",
"transcript": "ENST00000962942.1",
"protein_id": "ENSP00000633001.1",
"transcript_support_level": null,
"aa_start": 956,
"aa_end": null,
"aa_length": 970,
"cds_start": 2868,
"cds_end": null,
"cds_length": 2913,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962942.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2868G>T",
"hgvs_p": "p.Thr956Thr",
"transcript": "ENST00000962943.1",
"protein_id": "ENSP00000633002.1",
"transcript_support_level": null,
"aa_start": 956,
"aa_end": null,
"aa_length": 970,
"cds_start": 2868,
"cds_end": null,
"cds_length": 2913,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962943.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2835G>T",
"hgvs_p": "p.Thr945Thr",
"transcript": "ENST00000962945.1",
"protein_id": "ENSP00000633004.1",
"transcript_support_level": null,
"aa_start": 945,
"aa_end": null,
"aa_length": 959,
"cds_start": 2835,
"cds_end": null,
"cds_length": 2880,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962945.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2817G>T",
"hgvs_p": "p.Thr939Thr",
"transcript": "ENST00000962946.1",
"protein_id": "ENSP00000633005.1",
"transcript_support_level": null,
"aa_start": 939,
"aa_end": null,
"aa_length": 953,
"cds_start": 2817,
"cds_end": null,
"cds_length": 2862,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962946.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2817G>T",
"hgvs_p": "p.Thr939Thr",
"transcript": "ENST00000962948.1",
"protein_id": "ENSP00000633007.1",
"transcript_support_level": null,
"aa_start": 939,
"aa_end": null,
"aa_length": 953,
"cds_start": 2817,
"cds_end": null,
"cds_length": 2862,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962948.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 31,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2811G>T",
"hgvs_p": "p.Thr937Thr",
"transcript": "ENST00000858615.1",
"protein_id": "ENSP00000528674.1",
"transcript_support_level": null,
"aa_start": 937,
"aa_end": null,
"aa_length": 951,
"cds_start": 2811,
"cds_end": null,
"cds_length": 2856,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858615.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2808G>T",
"hgvs_p": "p.Thr936Thr",
"transcript": "ENST00000962940.1",
"protein_id": "ENSP00000632999.1",
"transcript_support_level": null,
"aa_start": 936,
"aa_end": null,
"aa_length": 950,
"cds_start": 2808,
"cds_end": null,
"cds_length": 2853,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962940.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2796G>T",
"hgvs_p": "p.Thr932Thr",
"transcript": "ENST00000962947.1",
"protein_id": "ENSP00000633006.1",
"transcript_support_level": null,
"aa_start": 932,
"aa_end": null,
"aa_length": 946,
"cds_start": 2796,
"cds_end": null,
"cds_length": 2841,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962947.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2775G>T",
"hgvs_p": "p.Thr925Thr",
"transcript": "ENST00000927326.1",
"protein_id": "ENSP00000597385.1",
"transcript_support_level": null,
"aa_start": 925,
"aa_end": null,
"aa_length": 939,
"cds_start": 2775,
"cds_end": null,
"cds_length": 2820,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000927326.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2751G>T",
"hgvs_p": "p.Thr917Thr",
"transcript": "NM_012327.6",
"protein_id": "NP_036459.1",
"transcript_support_level": null,
"aa_start": 917,
"aa_end": null,
"aa_length": 931,
"cds_start": 2751,
"cds_end": null,
"cds_length": 2796,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_012327.6"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2751G>T",
"hgvs_p": "p.Thr917Thr",
"transcript": "ENST00000357637.10",
"protein_id": "ENSP00000350263.4",
"transcript_support_level": 5,
"aa_start": 917,
"aa_end": null,
"aa_length": 931,
"cds_start": 2751,
"cds_end": null,
"cds_length": 2796,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000357637.10"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "c.2751G>T",
"hgvs_p": "p.Thr917Thr",
"transcript": "ENST00000638936.1",
"protein_id": "ENSP00000492592.1",
"transcript_support_level": 5,
"aa_start": 917,
"aa_end": null,
"aa_length": 931,
"cds_start": 2751,
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"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "n.*2111G>T",
"hgvs_p": null,
"transcript": "ENST00000640170.1",
"protein_id": "ENSP00000491270.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000640170.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "n.*1140G>T",
"hgvs_p": null,
"transcript": "ENST00000640268.1",
"protein_id": "ENSP00000491111.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000640268.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "n.*1709G>T",
"hgvs_p": null,
"transcript": "ENST00000640593.1",
"protein_id": "ENSP00000492017.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000640593.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"hgvs_c": "n.*316G>T",
"hgvs_p": null,
"transcript": "ENST00000640682.1",
"protein_id": "ENSP00000491415.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000640682.1"
}
],
"gene_symbol": "PIGN",
"gene_hgnc_id": 8967,
"dbsnp": "rs200481058",
"frequency_reference_population": 0.00051555847,
"hom_count_reference_population": 2,
"allele_count_reference_population": 832,
"gnomad_exomes_af": 0.000394106,
"gnomad_genomes_af": 0.00168147,
"gnomad_exomes_ac": 576,
"gnomad_genomes_ac": 256,
"gnomad_exomes_homalt": 1,
"gnomad_genomes_homalt": 1,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.25999999046325684,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.26,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.013,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -15,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Moderate,BP6_Very_Strong,BP7,BS1",
"acmg_by_gene": [
{
"score": -15,
"benign_score": 15,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate",
"BP6_Very_Strong",
"BP7",
"BS1"
],
"verdict": "Benign",
"transcript": "NM_001438896.1",
"gene_symbol": "PIGN",
"hgnc_id": 8967,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.2868G>T",
"hgvs_p": "p.Thr956Thr"
}
],
"clinvar_disease": "Inborn genetic diseases,Multiple congenital anomalies-hypotonia-seizures syndrome 1,PIGN-related disorder,not provided,not specified",
"clinvar_classification": "Benign/Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:4 B:2",
"phenotype_combined": "not provided|Multiple congenital anomalies-hypotonia-seizures syndrome 1|not specified|PIGN-related disorder|Inborn genetic diseases",
"pathogenicity_classification_combined": "Benign/Likely benign",
"custom_annotations": null
}
],
"message": null
}