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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 18-63331832-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=63331832&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "KDSR",
          "hgnc_id": 4021,
          "hgvs_c": "c.949C>T",
          "hgvs_p": "p.Arg317Cys",
          "inheritance_mode": "AR,AD",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "NM_002035.4",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "",
      "acmg_score": 0,
      "allele_count_reference_population": 20,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.3176,
      "alt": "A",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.21,
      "chr": "18",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": "Uncertain_significance",
      "computational_score_selected": 0.6971100568771362,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 332,
          "aa_ref": "R",
          "aa_start": 317,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5143,
          "cdna_start": 1037,
          "cds_end": null,
          "cds_length": 999,
          "cds_start": 949,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "NM_002035.4",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.949C>T",
          "hgvs_p": "p.Arg317Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000645214.2",
          "protein_coding": true,
          "protein_id": "NP_002026.1",
          "strand": false,
          "transcript": "NM_002035.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 332,
          "aa_ref": "R",
          "aa_start": 317,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 5143,
          "cdna_start": 1037,
          "cds_end": null,
          "cds_length": 999,
          "cds_start": 949,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000645214.2",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.949C>T",
          "hgvs_p": "p.Arg317Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_002035.4",
          "protein_coding": true,
          "protein_id": "ENSP00000494352.1",
          "strand": false,
          "transcript": "ENST00000645214.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 362,
          "aa_ref": "R",
          "aa_start": 347,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2558,
          "cdna_start": 1536,
          "cds_end": null,
          "cds_length": 1089,
          "cds_start": 1039,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000951441.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.1039C>T",
          "hgvs_p": "p.Arg347Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000621500.1",
          "strand": false,
          "transcript": "ENST00000951441.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 334,
          "aa_ref": "R",
          "aa_start": 319,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2418,
          "cdna_start": 1386,
          "cds_end": null,
          "cds_length": 1005,
          "cds_start": 955,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000882920.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.955C>T",
          "hgvs_p": "p.Arg319Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552979.1",
          "strand": false,
          "transcript": "ENST00000882920.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 334,
          "aa_ref": "R",
          "aa_start": 319,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2080,
          "cdna_start": 987,
          "cds_end": null,
          "cds_length": 1005,
          "cds_start": 955,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000882922.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.955C>T",
          "hgvs_p": "p.Arg319Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552981.1",
          "strand": false,
          "transcript": "ENST00000882922.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 331,
          "aa_ref": "R",
          "aa_start": 316,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2193,
          "cdna_start": 1087,
          "cds_end": null,
          "cds_length": 996,
          "cds_start": 946,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000928432.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.946C>T",
          "hgvs_p": "p.Arg316Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598491.1",
          "strand": false,
          "transcript": "ENST00000928432.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 330,
          "aa_ref": "R",
          "aa_start": 315,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2177,
          "cdna_start": 1155,
          "cds_end": null,
          "cds_length": 993,
          "cds_start": 943,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000951442.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.943C>T",
          "hgvs_p": "p.Arg315Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000621501.1",
          "strand": false,
          "transcript": "ENST00000951442.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 313,
          "aa_ref": "R",
          "aa_start": 298,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5216,
          "cdna_start": 950,
          "cds_end": null,
          "cds_length": 942,
          "cds_start": 892,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000882916.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.892C>T",
          "hgvs_p": "p.Arg298Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552975.1",
          "strand": false,
          "transcript": "ENST00000882916.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 310,
          "aa_ref": "R",
          "aa_start": 295,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2001,
          "cdna_start": 969,
          "cds_end": null,
          "cds_length": 933,
          "cds_start": 883,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000882923.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.883C>T",
          "hgvs_p": "p.Arg295Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552982.1",
          "strand": false,
          "transcript": "ENST00000882923.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 304,
          "aa_ref": "R",
          "aa_start": 289,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2402,
          "cdna_start": 1296,
          "cds_end": null,
          "cds_length": 915,
          "cds_start": 865,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000882917.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.865C>T",
          "hgvs_p": "p.Arg289Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552976.1",
          "strand": false,
          "transcript": "ENST00000882917.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 304,
          "aa_ref": "R",
          "aa_start": 289,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2356,
          "cdna_start": 1324,
          "cds_end": null,
          "cds_length": 915,
          "cds_start": 865,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000882919.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.865C>T",
          "hgvs_p": "p.Arg289Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552978.1",
          "strand": false,
          "transcript": "ENST00000882919.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 298,
          "aa_ref": "R",
          "aa_start": 283,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1378,
          "cdna_start": 929,
          "cds_end": null,
          "cds_length": 897,
          "cds_start": 847,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000591902.6",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.847C>T",
          "hgvs_p": "p.Arg283Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000468203.2",
          "strand": false,
          "transcript": "ENST00000591902.6",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 291,
          "aa_ref": "R",
          "aa_start": 276,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1944,
          "cdna_start": 912,
          "cds_end": null,
          "cds_length": 876,
          "cds_start": 826,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000928433.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.826C>T",
          "hgvs_p": "p.Arg276Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598492.1",
          "strand": false,
          "transcript": "ENST00000928433.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 278,
          "aa_ref": "R",
          "aa_start": 263,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1844,
          "cdna_start": 839,
          "cds_end": null,
          "cds_length": 837,
          "cds_start": 787,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000951443.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.787C>T",
          "hgvs_p": "p.Arg263Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000621502.1",
          "strand": false,
          "transcript": "ENST00000951443.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 276,
          "aa_ref": "R",
          "aa_start": 261,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1957,
          "cdna_start": 925,
          "cds_end": null,
          "cds_length": 831,
          "cds_start": 781,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000882921.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.781C>T",
          "hgvs_p": "p.Arg261Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552980.1",
          "strand": false,
          "transcript": "ENST00000882921.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 270,
          "aa_ref": "R",
          "aa_start": 255,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2287,
          "cdna_start": 1194,
          "cds_end": null,
          "cds_length": 813,
          "cds_start": 763,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000882918.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.763C>T",
          "hgvs_p": "p.Arg255Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552977.1",
          "strand": false,
          "transcript": "ENST00000882918.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 268,
          "aa_ref": "R",
          "aa_start": 253,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1024,
          "cdna_start": 843,
          "cds_end": null,
          "cds_length": 807,
          "cds_start": 757,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000326575.9",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.757C>T",
          "hgvs_p": "p.Arg253Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000312939.5",
          "strand": false,
          "transcript": "ENST00000326575.9",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 124,
          "aa_ref": "R",
          "aa_start": 109,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1347,
          "cdna_start": 341,
          "cds_end": null,
          "cds_length": 375,
          "cds_start": 325,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000882924.1",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "c.325C>T",
          "hgvs_p": "p.Arg109Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000552983.1",
          "strand": false,
          "transcript": "ENST00000882924.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3384,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000586791.5",
          "gene_hgnc_id": 4021,
          "gene_symbol": "KDSR",
          "hgvs_c": "n.2377C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.