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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 18-79400385-A-ACCCGC (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=79400385&ref=A&alt=ACCCGC&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "18",
      "pos": 79400385,
      "ref": "A",
      "alt": "ACCCGC",
      "effect": "frameshift_variant,start_lost",
      "transcript": "NM_172387.3",
      "consequences": [
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "ENST00000329101.8",
          "protein_id": "ENSP00000327850.3",
          "transcript_support_level": 1,
          "aa_start": 1,
          "aa_end": null,
          "aa_length": 930,
          "cds_start": 1,
          "cds_end": null,
          "cds_length": 2793,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000329101.8"
        },
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "ENST00000318065.9",
          "protein_id": "ENSP00000316553.5",
          "transcript_support_level": 1,
          "aa_start": 1,
          "aa_end": null,
          "aa_length": 812,
          "cds_start": 1,
          "cds_end": null,
          "cds_length": 2439,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000318065.9"
        },
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "ENST00000592223.5",
          "protein_id": "ENSP00000467181.1",
          "transcript_support_level": 1,
          "aa_start": 1,
          "aa_end": null,
          "aa_length": 703,
          "cds_start": 1,
          "cds_end": null,
          "cds_length": 2112,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000592223.5"
        },
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "ENST00000586434.1",
          "protein_id": "ENSP00000466489.1",
          "transcript_support_level": 1,
          "aa_start": 1,
          "aa_end": null,
          "aa_length": 700,
          "cds_start": 1,
          "cds_end": null,
          "cds_length": 2103,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000586434.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.127+4036_127+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "NM_001278669.2",
          "protein_id": "NP_001265598.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 943,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2832,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000427363.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001278669.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.127+4036_127+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "ENST00000427363.7",
          "protein_id": "ENSP00000389377.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 943,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2832,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001278669.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000427363.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.127+4036_127+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "ENST00000253506.9",
          "protein_id": "ENSP00000253506.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 825,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2478,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000253506.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.127+4036_127+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "ENST00000591814.5",
          "protein_id": "ENSP00000466194.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 716,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2151,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000591814.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.127+4036_127+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "ENST00000542384.5",
          "protein_id": "ENSP00000442435.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 713,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2142,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000542384.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.127+4036_127+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "ENST00000587635.5",
          "protein_id": "ENSP00000468111.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000587635.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-191+4036_-191+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "ENST00000397790.6",
          "protein_id": "ENSP00000380892.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 353,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1062,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397790.6"
        },
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "NM_172387.3",
          "protein_id": "NP_765975.1",
          "transcript_support_level": null,
          "aa_start": 1,
          "aa_end": null,
          "aa_length": 930,
          "cds_start": 1,
          "cds_end": null,
          "cds_length": 2793,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_172387.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "NM_172389.3",
          "protein_id": "NP_765977.1",
          "transcript_support_level": null,
          "aa_start": 1,
          "aa_end": null,
          "aa_length": 812,
          "cds_start": 1,
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          "cds_length": 2439,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_172389.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "NM_001278675.2",
          "protein_id": "NP_001265604.1",
          "transcript_support_level": null,
          "aa_start": 1,
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          "cds_start": 1,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001278675.2"
        },
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
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          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "NM_001278672.2",
          "protein_id": "NP_001265601.1",
          "transcript_support_level": null,
          "aa_start": 1,
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          "aa_length": 700,
          "cds_start": 1,
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          "cds_length": 2103,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001278672.2"
        },
        {
          "aa_ref": "M",
          "aa_alt": "PP?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant",
            "start_lost"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs",
          "transcript": "XM_047437538.1",
          "protein_id": "XP_047293494.1",
          "transcript_support_level": null,
          "aa_start": 1,
          "aa_end": null,
          "aa_length": 626,
          "cds_start": 1,
          "cds_end": null,
          "cds_length": 1881,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_047437538.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-283_-279dupCCGCC",
          "hgvs_p": null,
          "transcript": "NM_001278673.2",
          "protein_id": "NP_001265602.1",
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          "feature": "NM_001278673.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
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          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.-283_-279dupCCGCC",
          "hgvs_p": null,
          "transcript": "ENST00000545796.5",
          "protein_id": "ENSP00000439992.1",
          "transcript_support_level": 2,
          "aa_start": null,
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          "cds_start": null,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
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          "exon_count": 10,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.127+4036_127+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "NM_006162.5",
          "protein_id": "NP_006153.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 825,
          "cds_start": null,
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          "cds_length": 2478,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_006162.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "NFATC1",
          "gene_hgnc_id": 7775,
          "hgvs_c": "c.127+4036_127+4040dupCCGCC",
          "hgvs_p": null,
          "transcript": "NM_172390.3",
          "protein_id": "NP_765978.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 716,
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        {
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        {
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          "gene_symbol": "NFATC1",
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          "transcript": "ENST00000586434.1",
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          "biotype": "protein_coding",
          "feature": "ENST00000586434.1"
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      ],
      "gene_symbol": "NFATC1",
      "gene_hgnc_id": 7775,
      "dbsnp": "rs749645871",
      "frequency_reference_population": 0.002599061,
      "hom_count_reference_population": 30,
      "allele_count_reference_population": 2715,
      "gnomad_exomes_af": 0.00162255,
      "gnomad_genomes_af": 0.0101135,
      "gnomad_exomes_ac": 1500,
      "gnomad_genomes_ac": 1215,
      "gnomad_exomes_homalt": 13,
      "gnomad_genomes_homalt": 17,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": null,
      "splice_prediction_selected": null,
      "splice_source_selected": null,
      "revel_score": null,
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      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
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      "phylop100way_score": 1.115,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": null,
      "spliceai_max_prediction": null,
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
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      "acmg_score": -9,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP6,BS1,BS2",
      "acmg_by_gene": [
        {
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          "benign_score": 9,
          "pathogenic_score": 0,
          "criteria": [
            "BP6",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_172387.3",
          "gene_symbol": "NFATC1",
          "hgnc_id": 7775,
          "effects": [
            "frameshift_variant",
            "start_lost"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.-5_-1dupCCGCC",
          "hgvs_p": "p.Met1fs"
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      ],
      "clinvar_disease": "NFATC1-related disorder",
      "clinvar_classification": "Benign",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "NFATC1-related disorder",
      "pathogenicity_classification_combined": "Benign",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.