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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 18-9559427-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=18&pos=9559427&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "18",
"pos": 9559427,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001042388.3",
"consequences": [
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.2020G>T",
"hgvs_p": "p.Asp674Tyr",
"transcript": "NM_001042388.3",
"protein_id": "NP_001035847.1",
"transcript_support_level": null,
"aa_start": 674,
"aa_end": null,
"aa_length": 950,
"cds_start": 2020,
"cds_end": null,
"cds_length": 2853,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000400556.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001042388.3"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.2020G>T",
"hgvs_p": "p.Asp674Tyr",
"transcript": "ENST00000400556.8",
"protein_id": "ENSP00000383402.3",
"transcript_support_level": 1,
"aa_start": 674,
"aa_end": null,
"aa_length": 950,
"cds_start": 2020,
"cds_end": null,
"cds_length": 2853,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001042388.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000400556.8"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1969G>T",
"hgvs_p": "p.Asp657Tyr",
"transcript": "ENST00000400555.7",
"protein_id": "ENSP00000383401.3",
"transcript_support_level": 1,
"aa_start": 657,
"aa_end": null,
"aa_length": 933,
"cds_start": 1969,
"cds_end": null,
"cds_length": 2802,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000400555.7"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.2020G>T",
"hgvs_p": "p.Asp674Tyr",
"transcript": "ENST00000886291.1",
"protein_id": "ENSP00000556350.1",
"transcript_support_level": null,
"aa_start": 674,
"aa_end": null,
"aa_length": 947,
"cds_start": 2020,
"cds_end": null,
"cds_length": 2844,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000886291.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1969G>T",
"hgvs_p": "p.Asp657Tyr",
"transcript": "NM_005134.4",
"protein_id": "NP_005125.1",
"transcript_support_level": null,
"aa_start": 657,
"aa_end": null,
"aa_length": 933,
"cds_start": 1969,
"cds_end": null,
"cds_length": 2802,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005134.4"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1924G>T",
"hgvs_p": "p.Asp642Tyr",
"transcript": "ENST00000962496.1",
"protein_id": "ENSP00000632555.1",
"transcript_support_level": null,
"aa_start": 642,
"aa_end": null,
"aa_length": 918,
"cds_start": 1924,
"cds_end": null,
"cds_length": 2757,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962496.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1912G>T",
"hgvs_p": "p.Asp638Tyr",
"transcript": "ENST00000962495.1",
"protein_id": "ENSP00000632554.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 914,
"cds_start": 1912,
"cds_end": null,
"cds_length": 2745,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962495.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1861G>T",
"hgvs_p": "p.Asp621Tyr",
"transcript": "ENST00000962497.1",
"protein_id": "ENSP00000632556.1",
"transcript_support_level": null,
"aa_start": 621,
"aa_end": null,
"aa_length": 897,
"cds_start": 1861,
"cds_end": null,
"cds_length": 2694,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962497.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1840G>T",
"hgvs_p": "p.Asp614Tyr",
"transcript": "ENST00000886293.1",
"protein_id": "ENSP00000556352.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 890,
"cds_start": 1840,
"cds_end": null,
"cds_length": 2673,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000886293.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1753G>T",
"hgvs_p": "p.Asp585Tyr",
"transcript": "NM_001382562.1",
"protein_id": "NP_001369491.1",
"transcript_support_level": null,
"aa_start": 585,
"aa_end": null,
"aa_length": 861,
"cds_start": 1753,
"cds_end": null,
"cds_length": 2586,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001382562.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1687G>T",
"hgvs_p": "p.Asp563Tyr",
"transcript": "ENST00000924156.1",
"protein_id": "ENSP00000594215.1",
"transcript_support_level": null,
"aa_start": 563,
"aa_end": null,
"aa_length": 839,
"cds_start": 1687,
"cds_end": null,
"cds_length": 2520,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000924156.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1636G>T",
"hgvs_p": "p.Asp546Tyr",
"transcript": "ENST00000886292.1",
"protein_id": "ENSP00000556351.1",
"transcript_support_level": null,
"aa_start": 546,
"aa_end": null,
"aa_length": 822,
"cds_start": 1636,
"cds_end": null,
"cds_length": 2469,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000886292.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1582G>T",
"hgvs_p": "p.Asp528Tyr",
"transcript": "ENST00000962498.1",
"protein_id": "ENSP00000632557.1",
"transcript_support_level": null,
"aa_start": 528,
"aa_end": null,
"aa_length": 804,
"cds_start": 1582,
"cds_end": null,
"cds_length": 2415,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962498.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1531G>T",
"hgvs_p": "p.Asp511Tyr",
"transcript": "ENST00000924157.1",
"protein_id": "ENSP00000594216.1",
"transcript_support_level": null,
"aa_start": 511,
"aa_end": null,
"aa_length": 787,
"cds_start": 1531,
"cds_end": null,
"cds_length": 2364,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000924157.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.2176G>T",
"hgvs_p": "p.Asp726Tyr",
"transcript": "XM_011525775.4",
"protein_id": "XP_011524077.1",
"transcript_support_level": null,
"aa_start": 726,
"aa_end": null,
"aa_length": 1002,
"cds_start": 2176,
"cds_end": null,
"cds_length": 3009,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011525775.4"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.2125G>T",
"hgvs_p": "p.Asp709Tyr",
"transcript": "XM_011525776.2",
"protein_id": "XP_011524078.1",
"transcript_support_level": null,
"aa_start": 709,
"aa_end": null,
"aa_length": 985,
"cds_start": 2125,
"cds_end": null,
"cds_length": 2958,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011525776.2"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.2017G>T",
"hgvs_p": "p.Asp673Tyr",
"transcript": "XM_017026105.3",
"protein_id": "XP_016881594.1",
"transcript_support_level": null,
"aa_start": 673,
"aa_end": null,
"aa_length": 949,
"cds_start": 2017,
"cds_end": null,
"cds_length": 2850,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017026105.3"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1966G>T",
"hgvs_p": "p.Asp656Tyr",
"transcript": "XM_047437973.1",
"protein_id": "XP_047293929.1",
"transcript_support_level": null,
"aa_start": 656,
"aa_end": null,
"aa_length": 932,
"cds_start": 1966,
"cds_end": null,
"cds_length": 2799,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437973.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1861G>T",
"hgvs_p": "p.Asp621Tyr",
"transcript": "XM_047437974.1",
"protein_id": "XP_047293930.1",
"transcript_support_level": null,
"aa_start": 621,
"aa_end": null,
"aa_length": 897,
"cds_start": 1861,
"cds_end": null,
"cds_length": 2694,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437974.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1843G>T",
"hgvs_p": "p.Asp615Tyr",
"transcript": "XM_011525779.4",
"protein_id": "XP_011524081.1",
"transcript_support_level": null,
"aa_start": 615,
"aa_end": null,
"aa_length": 891,
"cds_start": 1843,
"cds_end": null,
"cds_length": 2676,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011525779.4"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1810G>T",
"hgvs_p": "p.Asp604Tyr",
"transcript": "XM_047437975.1",
"protein_id": "XP_047293931.1",
"transcript_support_level": null,
"aa_start": 604,
"aa_end": null,
"aa_length": 880,
"cds_start": 1810,
"cds_end": null,
"cds_length": 2643,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047437975.1"
},
{
"aa_ref": "D",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP4R1",
"gene_hgnc_id": 9320,
"hgvs_c": "c.1792G>T",
"hgvs_p": "p.Asp598Tyr",
"transcript": "XM_047437976.1",
"protein_id": "XP_047293932.1",
"transcript_support_level": null,
"aa_start": 598,
"aa_end": null,
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{
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],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
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"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
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}
],
"message": null
}