← Back to variant description

GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 19-10180405-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=10180405&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "19",
      "pos": 10180405,
      "ref": "T",
      "alt": "C",
      "effect": "synonymous_variant",
      "transcript": "ENST00000359526.9",
      "consequences": [
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "NM_001130823.3",
          "protein_id": "NP_001124295.1",
          "transcript_support_level": null,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1632,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4899,
          "cdna_start": 444,
          "cdna_end": null,
          "cdna_length": 5274,
          "mane_select": "ENST00000359526.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "ENST00000359526.9",
          "protein_id": "ENSP00000352516.3",
          "transcript_support_level": 1,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1632,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4899,
          "cdna_start": 444,
          "cdna_end": null,
          "cdna_length": 5274,
          "mane_select": "NM_001130823.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "ENST00000340748.8",
          "protein_id": "ENSP00000345739.3",
          "transcript_support_level": 1,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1616,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4851,
          "cdna_start": 626,
          "cdna_end": null,
          "cdna_length": 5408,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.*80A>G",
          "hgvs_p": null,
          "transcript": "ENST00000592705.5",
          "protein_id": "ENSP00000466657.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5215,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.*80A>G",
          "hgvs_p": null,
          "transcript": "ENST00000592705.5",
          "protein_id": "ENSP00000466657.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5215,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "ENST00000678804.1",
          "protein_id": "ENSP00000503853.1",
          "transcript_support_level": null,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1658,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4977,
          "cdna_start": 446,
          "cdna_end": null,
          "cdna_length": 5728,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "ENST00000677946.1",
          "protein_id": "ENSP00000504202.1",
          "transcript_support_level": null,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1655,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4968,
          "cdna_start": 446,
          "cdna_end": null,
          "cdna_length": 5665,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "NM_001318730.2",
          "protein_id": "NP_001305659.1",
          "transcript_support_level": null,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1619,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4860,
          "cdna_start": 444,
          "cdna_end": null,
          "cdna_length": 5235,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "NM_001379.4",
          "protein_id": "NP_001370.1",
          "transcript_support_level": null,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1616,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4851,
          "cdna_start": 444,
          "cdna_end": null,
          "cdna_length": 5226,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "ENST00000676610.1",
          "protein_id": "ENSP00000504236.1",
          "transcript_support_level": null,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1613,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4842,
          "cdna_start": 446,
          "cdna_end": null,
          "cdna_length": 7157,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "ENST00000679313.1",
          "protein_id": "ENSP00000504512.1",
          "transcript_support_level": null,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1580,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4743,
          "cdna_start": 446,
          "cdna_end": null,
          "cdna_length": 5122,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys",
          "transcript": "ENST00000679103.1",
          "protein_id": "ENSP00000503151.1",
          "transcript_support_level": null,
          "aa_start": 130,
          "aa_end": null,
          "aa_length": 1577,
          "cds_start": 390,
          "cds_end": null,
          "cds_length": 4734,
          "cdna_start": 446,
          "cdna_end": null,
          "cdna_length": 5126,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.27A>G",
          "hgvs_p": "p.Lys9Lys",
          "transcript": "NM_001318731.2",
          "protein_id": "NP_001305660.1",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1511,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 4536,
          "cdna_start": 404,
          "cdna_end": null,
          "cdna_length": 5234,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.555A>G",
          "hgvs_p": "p.Lys185Lys",
          "transcript": "ENST00000588118.5",
          "protein_id": "ENSP00000465223.1",
          "transcript_support_level": 5,
          "aa_start": 185,
          "aa_end": null,
          "aa_length": 254,
          "cds_start": 555,
          "cds_end": null,
          "cds_length": 765,
          "cdna_start": 763,
          "cdna_end": null,
          "cdna_length": 973,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.27A>G",
          "hgvs_p": "p.Lys9Lys",
          "transcript": "ENST00000588952.5",
          "protein_id": "ENSP00000467050.1",
          "transcript_support_level": 5,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 118,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 357,
          "cdna_start": 511,
          "cdna_end": null,
          "cdna_length": 841,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.27A>G",
          "hgvs_p": "p.Lys9Lys",
          "transcript": "ENST00000592342.5",
          "protein_id": "ENSP00000465993.1",
          "transcript_support_level": 3,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 93,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 283,
          "cdna_start": 380,
          "cdna_end": null,
          "cdna_length": 636,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.27A>G",
          "hgvs_p": "p.Lys9Lys",
          "transcript": "ENST00000592054.5",
          "protein_id": "ENSP00000468359.1",
          "transcript_support_level": 4,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 70,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 214,
          "cdna_start": 404,
          "cdna_end": null,
          "cdna_length": 591,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.27A>G",
          "hgvs_p": "p.Lys9Lys",
          "transcript": "ENST00000586800.5",
          "protein_id": "ENSP00000465555.1",
          "transcript_support_level": 3,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 24,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 77,
          "cdna_start": 533,
          "cdna_end": null,
          "cdna_length": 583,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.*218A>G",
          "hgvs_p": null,
          "transcript": "ENST00000586988.5",
          "protein_id": "ENSP00000464958.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 711,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.446A>G",
          "hgvs_p": null,
          "transcript": "ENST00000676820.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6055,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.*80A>G",
          "hgvs_p": null,
          "transcript": "ENST00000677013.1",
          "protein_id": "ENSP00000503135.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5175,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.390A>G",
          "hgvs_p": null,
          "transcript": "ENST00000677250.1",
          "protein_id": "ENSP00000502894.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5127,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.27A>G",
          "hgvs_p": null,
          "transcript": "ENST00000677616.1",
          "protein_id": "ENSP00000503055.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5101,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.390A>G",
          "hgvs_p": null,
          "transcript": "ENST00000677634.1",
          "protein_id": "ENSP00000504246.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5165,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.*218A>G",
          "hgvs_p": null,
          "transcript": "ENST00000586988.5",
          "protein_id": "ENSP00000464958.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 711,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.*80A>G",
          "hgvs_p": null,
          "transcript": "ENST00000677013.1",
          "protein_id": "ENSP00000503135.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5175,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.225+373A>G",
          "hgvs_p": null,
          "transcript": "ENST00000677685.1",
          "protein_id": "ENSP00000503407.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4974,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "c.-25A>G",
          "hgvs_p": null,
          "transcript": "ENST00000590619.1",
          "protein_id": "ENSP00000468062.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 75,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 230,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 231,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DNMT1",
          "gene_hgnc_id": 2976,
          "hgvs_c": "n.*58A>G",
          "hgvs_p": null,
          "transcript": "ENST00000586086.1",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 489,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "DNMT1",
      "gene_hgnc_id": 2976,
      "dbsnp": "rs373499917",
      "frequency_reference_population": 0.000117113435,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 189,
      "gnomad_exomes_af": 0.000121087,
      "gnomad_genomes_af": 0.0000789183,
      "gnomad_exomes_ac": 177,
      "gnomad_genomes_ac": 12,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.9100000262260437,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.91,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -1.169,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -17,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS2",
      "acmg_by_gene": [
        {
          "score": -17,
          "benign_score": 17,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000359526.9",
          "gene_symbol": "DNMT1",
          "hgnc_id": 2976,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.390A>G",
          "hgvs_p": "p.Lys130Lys"
        }
      ],
      "clinvar_disease": "Hereditary sensory neuropathy-deafness-dementia syndrome,not provided",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:3",
      "phenotype_combined": "Hereditary sensory neuropathy-deafness-dementia syndrome|not provided",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}