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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 19-10459733-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=10459733&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "19",
      "pos": 10459733,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001111307.2",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1339G>C",
          "hgvs_p": "p.Val447Leu",
          "transcript": "NM_001111307.2",
          "protein_id": "NP_001104777.1",
          "transcript_support_level": null,
          "aa_start": 447,
          "aa_end": null,
          "aa_length": 886,
          "cds_start": 1339,
          "cds_end": null,
          "cds_length": 2661,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000380702.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001111307.2"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1339G>C",
          "hgvs_p": "p.Val447Leu",
          "transcript": "ENST00000380702.7",
          "protein_id": "ENSP00000370078.3",
          "transcript_support_level": 1,
          "aa_start": 447,
          "aa_end": null,
          "aa_length": 886,
          "cds_start": 1339,
          "cds_end": null,
          "cds_length": 2661,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001111307.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000380702.7"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1273G>C",
          "hgvs_p": "p.Val425Leu",
          "transcript": "ENST00000592685.5",
          "protein_id": "ENSP00000468507.1",
          "transcript_support_level": 1,
          "aa_start": 425,
          "aa_end": null,
          "aa_length": 864,
          "cds_start": 1273,
          "cds_end": null,
          "cds_length": 2595,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000592685.5"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1261G>C",
          "hgvs_p": "p.Val421Leu",
          "transcript": "ENST00000293683.9",
          "protein_id": "ENSP00000293683.4",
          "transcript_support_level": 1,
          "aa_start": 421,
          "aa_end": null,
          "aa_length": 860,
          "cds_start": 1261,
          "cds_end": null,
          "cds_length": 2583,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000293683.9"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1156G>C",
          "hgvs_p": "p.Val386Leu",
          "transcript": "ENST00000440014.6",
          "protein_id": "ENSP00000394754.1",
          "transcript_support_level": 1,
          "aa_start": 386,
          "aa_end": null,
          "aa_length": 825,
          "cds_start": 1156,
          "cds_end": null,
          "cds_length": 2478,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000440014.6"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.622G>C",
          "hgvs_p": "p.Val208Leu",
          "transcript": "ENST00000344979.7",
          "protein_id": "ENSP00000341007.2",
          "transcript_support_level": 1,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 647,
          "cds_start": 622,
          "cds_end": null,
          "cds_length": 1944,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000344979.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "n.669G>C",
          "hgvs_p": null,
          "transcript": "ENST00000590407.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000590407.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1306G>C",
          "hgvs_p": "p.Val436Leu",
          "transcript": "ENST00000937031.1",
          "protein_id": "ENSP00000607090.1",
          "transcript_support_level": null,
          "aa_start": 436,
          "aa_end": null,
          "aa_length": 875,
          "cds_start": 1306,
          "cds_end": null,
          "cds_length": 2628,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000937031.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1273G>C",
          "hgvs_p": "p.Val425Leu",
          "transcript": "NM_001243121.2",
          "protein_id": "NP_001230050.1",
          "transcript_support_level": null,
          "aa_start": 425,
          "aa_end": null,
          "aa_length": 864,
          "cds_start": 1273,
          "cds_end": null,
          "cds_length": 2595,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001243121.2"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1261G>C",
          "hgvs_p": "p.Val421Leu",
          "transcript": "NM_001111308.1",
          "protein_id": "NP_001104778.1",
          "transcript_support_level": null,
          "aa_start": 421,
          "aa_end": null,
          "aa_length": 860,
          "cds_start": 1261,
          "cds_end": null,
          "cds_length": 2583,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001111308.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1207G>C",
          "hgvs_p": "p.Val403Leu",
          "transcript": "ENST00000937030.1",
          "protein_id": "ENSP00000607089.1",
          "transcript_support_level": null,
          "aa_start": 403,
          "aa_end": null,
          "aa_length": 842,
          "cds_start": 1207,
          "cds_end": null,
          "cds_length": 2529,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000937030.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1156G>C",
          "hgvs_p": "p.Val386Leu",
          "transcript": "NM_001111309.1",
          "protein_id": "NP_001104779.1",
          "transcript_support_level": null,
          "aa_start": 386,
          "aa_end": null,
          "aa_length": 825,
          "cds_start": 1156,
          "cds_end": null,
          "cds_length": 2478,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001111309.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1147G>C",
          "hgvs_p": "p.Val383Leu",
          "transcript": "ENST00000875632.1",
          "protein_id": "ENSP00000545691.1",
          "transcript_support_level": null,
          "aa_start": 383,
          "aa_end": null,
          "aa_length": 822,
          "cds_start": 1147,
          "cds_end": null,
          "cds_length": 2469,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000875632.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.622G>C",
          "hgvs_p": "p.Val208Leu",
          "transcript": "NM_006202.3",
          "protein_id": "NP_006193.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 647,
          "cds_start": 622,
          "cds_end": null,
          "cds_length": 1944,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_006202.3"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1336G>C",
          "hgvs_p": "p.Val446Leu",
          "transcript": "XM_017026865.3",
          "protein_id": "XP_016882354.1",
          "transcript_support_level": null,
          "aa_start": 446,
          "aa_end": null,
          "aa_length": 885,
          "cds_start": 1336,
          "cds_end": null,
          "cds_length": 2658,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017026865.3"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1270G>C",
          "hgvs_p": "p.Val424Leu",
          "transcript": "XM_047438910.1",
          "protein_id": "XP_047294866.1",
          "transcript_support_level": null,
          "aa_start": 424,
          "aa_end": null,
          "aa_length": 863,
          "cds_start": 1270,
          "cds_end": null,
          "cds_length": 2592,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047438910.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1258G>C",
          "hgvs_p": "p.Val420Leu",
          "transcript": "XM_047438911.1",
          "protein_id": "XP_047294867.1",
          "transcript_support_level": null,
          "aa_start": 420,
          "aa_end": null,
          "aa_length": 859,
          "cds_start": 1258,
          "cds_end": null,
          "cds_length": 2580,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047438911.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1153G>C",
          "hgvs_p": "p.Val385Leu",
          "transcript": "XM_047438912.1",
          "protein_id": "XP_047294868.1",
          "transcript_support_level": null,
          "aa_start": 385,
          "aa_end": null,
          "aa_length": 824,
          "cds_start": 1153,
          "cds_end": null,
          "cds_length": 2475,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047438912.1"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1339G>C",
          "hgvs_p": "p.Val447Leu",
          "transcript": "XM_011528055.4",
          "protein_id": "XP_011526357.1",
          "transcript_support_level": null,
          "aa_start": 447,
          "aa_end": null,
          "aa_length": 657,
          "cds_start": 1339,
          "cds_end": null,
          "cds_length": 1974,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011528055.4"
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PDE4A",
          "gene_hgnc_id": 8780,
          "hgvs_c": "c.1261G>C",
          "hgvs_p": "p.Val421Leu",
          "transcript": "XM_047438913.1",
          "protein_id": "XP_047294869.1",
          "transcript_support_level": null,
          "aa_start": 421,
          "aa_end": null,
          "aa_length": 631,
          "cds_start": 1261,
          "cds_end": null,
          "cds_length": 1896,
          "cdna_start": null,
          "cdna_end": null,
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      "splice_source_selected": "max_spliceai",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.