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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 19-12763338-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=12763338&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "19",
      "pos": 12763338,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_001400041.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2104C>T",
          "hgvs_p": "p.Arg702Cys",
          "transcript": "NM_013312.3",
          "protein_id": "NP_037444.2",
          "transcript_support_level": null,
          "aa_start": 702,
          "aa_end": null,
          "aa_length": 719,
          "cds_start": 2104,
          "cds_end": null,
          "cds_length": 2160,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000397668.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_013312.3"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2104C>T",
          "hgvs_p": "p.Arg702Cys",
          "transcript": "ENST00000397668.8",
          "protein_id": "ENSP00000380785.2",
          "transcript_support_level": 1,
          "aa_start": 702,
          "aa_end": null,
          "aa_length": 719,
          "cds_start": 2104,
          "cds_end": null,
          "cds_length": 2160,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_013312.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397668.8"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2098C>T",
          "hgvs_p": "p.Arg700Cys",
          "transcript": "ENST00000264827.9",
          "protein_id": "ENSP00000264827.4",
          "transcript_support_level": 1,
          "aa_start": 700,
          "aa_end": null,
          "aa_length": 717,
          "cds_start": 2098,
          "cds_end": null,
          "cds_length": 2154,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000264827.9"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2392C>T",
          "hgvs_p": "p.Arg798Cys",
          "transcript": "ENST00000894580.1",
          "protein_id": "ENSP00000564639.1",
          "transcript_support_level": null,
          "aa_start": 798,
          "aa_end": null,
          "aa_length": 815,
          "cds_start": 2392,
          "cds_end": null,
          "cds_length": 2448,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894580.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2284C>T",
          "hgvs_p": "p.Arg762Cys",
          "transcript": "ENST00000894575.1",
          "protein_id": "ENSP00000564634.1",
          "transcript_support_level": null,
          "aa_start": 762,
          "aa_end": null,
          "aa_length": 779,
          "cds_start": 2284,
          "cds_end": null,
          "cds_length": 2340,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894575.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2281C>T",
          "hgvs_p": "p.Arg761Cys",
          "transcript": "ENST00000894576.1",
          "protein_id": "ENSP00000564635.1",
          "transcript_support_level": null,
          "aa_start": 761,
          "aa_end": null,
          "aa_length": 778,
          "cds_start": 2281,
          "cds_end": null,
          "cds_length": 2337,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894576.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2206C>T",
          "hgvs_p": "p.Arg736Cys",
          "transcript": "NM_001400041.1",
          "protein_id": "NP_001386970.1",
          "transcript_support_level": null,
          "aa_start": 736,
          "aa_end": null,
          "aa_length": 753,
          "cds_start": 2206,
          "cds_end": null,
          "cds_length": 2262,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001400041.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2116C>T",
          "hgvs_p": "p.Arg706Cys",
          "transcript": "ENST00000914424.1",
          "protein_id": "ENSP00000584483.1",
          "transcript_support_level": null,
          "aa_start": 706,
          "aa_end": null,
          "aa_length": 723,
          "cds_start": 2116,
          "cds_end": null,
          "cds_length": 2172,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000914424.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2098C>T",
          "hgvs_p": "p.Arg700Cys",
          "transcript": "NM_001100176.2",
          "protein_id": "NP_001093646.1",
          "transcript_support_level": null,
          "aa_start": 700,
          "aa_end": null,
          "aa_length": 717,
          "cds_start": 2098,
          "cds_end": null,
          "cds_length": 2154,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001100176.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2095C>T",
          "hgvs_p": "p.Arg699Cys",
          "transcript": "ENST00000894574.1",
          "protein_id": "ENSP00000564633.1",
          "transcript_support_level": null,
          "aa_start": 699,
          "aa_end": null,
          "aa_length": 716,
          "cds_start": 2095,
          "cds_end": null,
          "cds_length": 2151,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894574.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2092C>T",
          "hgvs_p": "p.Arg698Cys",
          "transcript": "ENST00000894579.1",
          "protein_id": "ENSP00000564638.1",
          "transcript_support_level": null,
          "aa_start": 698,
          "aa_end": null,
          "aa_length": 715,
          "cds_start": 2092,
          "cds_end": null,
          "cds_length": 2148,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894579.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2092C>T",
          "hgvs_p": "p.Arg698Cys",
          "transcript": "ENST00000961673.1",
          "protein_id": "ENSP00000631732.1",
          "transcript_support_level": null,
          "aa_start": 698,
          "aa_end": null,
          "aa_length": 715,
          "cds_start": 2092,
          "cds_end": null,
          "cds_length": 2148,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961673.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2089C>T",
          "hgvs_p": "p.Arg697Cys",
          "transcript": "ENST00000961672.1",
          "protein_id": "ENSP00000631731.1",
          "transcript_support_level": null,
          "aa_start": 697,
          "aa_end": null,
          "aa_length": 714,
          "cds_start": 2089,
          "cds_end": null,
          "cds_length": 2145,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961672.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2083C>T",
          "hgvs_p": "p.Arg695Cys",
          "transcript": "ENST00000894578.1",
          "protein_id": "ENSP00000564637.1",
          "transcript_support_level": null,
          "aa_start": 695,
          "aa_end": null,
          "aa_length": 712,
          "cds_start": 2083,
          "cds_end": null,
          "cds_length": 2139,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894578.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2080C>T",
          "hgvs_p": "p.Arg694Cys",
          "transcript": "ENST00000914426.1",
          "protein_id": "ENSP00000584485.1",
          "transcript_support_level": null,
          "aa_start": 694,
          "aa_end": null,
          "aa_length": 711,
          "cds_start": 2080,
          "cds_end": null,
          "cds_length": 2136,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000914426.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2080C>T",
          "hgvs_p": "p.Arg694Cys",
          "transcript": "ENST00000961674.1",
          "protein_id": "ENSP00000631733.1",
          "transcript_support_level": null,
          "aa_start": 694,
          "aa_end": null,
          "aa_length": 711,
          "cds_start": 2080,
          "cds_end": null,
          "cds_length": 2136,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961674.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2038C>T",
          "hgvs_p": "p.Arg680Cys",
          "transcript": "ENST00000961675.1",
          "protein_id": "ENSP00000631734.1",
          "transcript_support_level": null,
          "aa_start": 680,
          "aa_end": null,
          "aa_length": 697,
          "cds_start": 2038,
          "cds_end": null,
          "cds_length": 2094,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000961675.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2029C>T",
          "hgvs_p": "p.Arg677Cys",
          "transcript": "ENST00000894581.1",
          "protein_id": "ENSP00000564640.1",
          "transcript_support_level": null,
          "aa_start": 677,
          "aa_end": null,
          "aa_length": 694,
          "cds_start": 2029,
          "cds_end": null,
          "cds_length": 2085,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000894581.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.2017C>T",
          "hgvs_p": "p.Arg673Cys",
          "transcript": "ENST00000914425.1",
          "protein_id": "ENSP00000584484.1",
          "transcript_support_level": null,
          "aa_start": 673,
          "aa_end": null,
          "aa_length": 690,
          "cds_start": 2017,
          "cds_end": null,
          "cds_length": 2073,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000914425.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HOOK2",
          "gene_hgnc_id": 19885,
          "hgvs_c": "c.1987C>T",
          "hgvs_p": "p.Arg663Cys",
          "transcript": "ENST00000894577.1",
          "protein_id": "ENSP00000564636.1",
          "transcript_support_level": null,
          "aa_start": 663,
          "aa_end": null,
          "aa_length": 680,
          "cds_start": 1987,
          "cds_end": null,
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        {
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          "transcript": "NM_001400041.1",
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      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.