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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-13933474-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=13933474&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 13933474,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_001370095.3",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.768-19C>T",
"hgvs_p": null,
"transcript": "NM_001370095.3",
"protein_id": "NP_001357024.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 574,
"cds_start": null,
"cds_end": null,
"cds_length": 1725,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000588872.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001370095.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.768-19C>T",
"hgvs_p": null,
"transcript": "ENST00000588872.3",
"protein_id": "ENSP00000467395.2",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 574,
"cds_start": null,
"cds_end": null,
"cds_length": 1725,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001370095.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000588872.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.768-19C>T",
"hgvs_p": null,
"transcript": "ENST00000339560.10",
"protein_id": "ENSP00000345175.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 505,
"cds_start": null,
"cds_end": null,
"cds_length": 1518,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000339560.10"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.768-19C>T",
"hgvs_p": null,
"transcript": "ENST00000886044.1",
"protein_id": "ENSP00000556103.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 574,
"cds_start": null,
"cds_end": null,
"cds_length": 1725,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000886044.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.783-19C>T",
"hgvs_p": null,
"transcript": "NM_001146254.2",
"protein_id": "NP_001139726.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 510,
"cds_start": null,
"cds_end": null,
"cds_length": 1533,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001146254.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.783-19C>T",
"hgvs_p": null,
"transcript": "ENST00000538371.6",
"protein_id": "ENSP00000442553.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 510,
"cds_start": null,
"cds_end": null,
"cds_length": 1533,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000538371.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.768-19C>T",
"hgvs_p": null,
"transcript": "NM_024825.5",
"protein_id": "NP_079101.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 505,
"cds_start": null,
"cds_end": null,
"cds_length": 1518,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_024825.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.501-19C>T",
"hgvs_p": null,
"transcript": "ENST00000886045.1",
"protein_id": "ENSP00000556104.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 485,
"cds_start": null,
"cds_end": null,
"cds_length": 1458,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000886045.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.483-19C>T",
"hgvs_p": null,
"transcript": "ENST00000946319.1",
"protein_id": "ENSP00000616378.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 479,
"cds_start": null,
"cds_end": null,
"cds_length": 1440,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946319.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.342-19C>T",
"hgvs_p": null,
"transcript": "ENST00000946318.1",
"protein_id": "ENSP00000616377.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 432,
"cds_start": null,
"cds_end": null,
"cds_length": 1299,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946318.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.543-19C>T",
"hgvs_p": null,
"transcript": "NM_001411137.1",
"protein_id": "NP_001398066.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 430,
"cds_start": null,
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"cds_length": 1293,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001411137.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.543-19C>T",
"hgvs_p": null,
"transcript": "ENST00000254320.7",
"protein_id": "ENSP00000254320.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 430,
"cds_start": null,
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"cds_length": 1293,
"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000254320.7"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.516-19C>T",
"hgvs_p": null,
"transcript": "NM_001146255.2",
"protein_id": "NP_001139727.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 421,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001146255.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.516-19C>T",
"hgvs_p": null,
"transcript": "ENST00000538517.6",
"protein_id": "ENSP00000440080.1",
"transcript_support_level": 2,
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"biotype": "protein_coding",
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},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.297-19C>T",
"hgvs_p": null,
"transcript": "ENST00000588764.5",
"protein_id": "ENSP00000464972.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 180,
"cds_start": null,
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"cds_length": 543,
"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000588764.5"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.276-19C>T",
"hgvs_p": null,
"transcript": "ENST00000586075.1",
"protein_id": "ENSP00000468151.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000586075.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.237-19C>T",
"hgvs_p": null,
"transcript": "ENST00000591353.5",
"protein_id": "ENSP00000468225.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000591353.5"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.783-19C>T",
"hgvs_p": null,
"transcript": "XM_011528308.1",
"protein_id": "XP_011526610.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 579,
"cds_start": null,
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"cdna_start": null,
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"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.735-19C>T",
"hgvs_p": null,
"transcript": "XM_011528309.3",
"protein_id": "XP_011526611.1",
"transcript_support_level": null,
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"feature": "XM_011528309.3"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.699-19C>T",
"hgvs_p": null,
"transcript": "XM_011528310.3",
"protein_id": "XP_011526612.1",
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"biotype": "protein_coding",
"feature": "XM_011528310.3"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.690-19C>T",
"hgvs_p": null,
"transcript": "XM_011528311.2",
"protein_id": "XP_011526613.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 548,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011528311.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PODNL1",
"gene_hgnc_id": 26275,
"hgvs_c": "c.654-19C>T",
"hgvs_p": null,
"transcript": "XM_006722902.2",
"protein_id": "XP_006722965.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 536,
"cds_start": null,
"cds_end": null,
"cds_length": 1611,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006722902.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 5,
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{
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}
],
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}