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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 19-13933474-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=13933474&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "19",
      "pos": 13933474,
      "ref": "G",
      "alt": "A",
      "effect": "intron_variant",
      "transcript": "NM_001370095.3",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.768-19C>T",
          "hgvs_p": null,
          "transcript": "NM_001370095.3",
          "protein_id": "NP_001357024.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 574,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1725,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000588872.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370095.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.768-19C>T",
          "hgvs_p": null,
          "transcript": "ENST00000588872.3",
          "protein_id": "ENSP00000467395.2",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 574,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1725,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001370095.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000588872.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.768-19C>T",
          "hgvs_p": null,
          "transcript": "ENST00000339560.10",
          "protein_id": "ENSP00000345175.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000339560.10"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.768-19C>T",
          "hgvs_p": null,
          "transcript": "ENST00000886044.1",
          "protein_id": "ENSP00000556103.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 574,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1725,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886044.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.783-19C>T",
          "hgvs_p": null,
          "transcript": "NM_001146254.2",
          "protein_id": "NP_001139726.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 510,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1533,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001146254.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.783-19C>T",
          "hgvs_p": null,
          "transcript": "ENST00000538371.6",
          "protein_id": "ENSP00000442553.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 510,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1533,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000538371.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.768-19C>T",
          "hgvs_p": null,
          "transcript": "NM_024825.5",
          "protein_id": "NP_079101.4",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_024825.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.501-19C>T",
          "hgvs_p": null,
          "transcript": "ENST00000886045.1",
          "protein_id": "ENSP00000556104.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 485,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1458,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886045.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.483-19C>T",
          "hgvs_p": null,
          "transcript": "ENST00000946319.1",
          "protein_id": "ENSP00000616378.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 479,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1440,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000946319.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.342-19C>T",
          "hgvs_p": null,
          "transcript": "ENST00000946318.1",
          "protein_id": "ENSP00000616377.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 432,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1299,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
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          "intron_rank": 5,
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          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.543-19C>T",
          "hgvs_p": null,
          "transcript": "NM_001411137.1",
          "protein_id": "NP_001398066.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 430,
          "cds_start": null,
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          "cds_length": 1293,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001411137.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          "gene_symbol": "PODNL1",
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          "hgvs_c": "c.543-19C>T",
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          "transcript": "ENST00000254320.7",
          "protein_id": "ENSP00000254320.3",
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          "cds_start": null,
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          "mane_select": null,
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        {
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          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
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          "transcript": "NM_001146255.2",
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          "cds_start": null,
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        {
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          "intron_rank": 5,
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          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.516-19C>T",
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          "transcript": "ENST00000538517.6",
          "protein_id": "ENSP00000440080.1",
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          "cds_start": null,
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        {
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        {
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          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.276-19C>T",
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          "transcript": "ENST00000586075.1",
          "protein_id": "ENSP00000468151.1",
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        {
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          "gene_symbol": "PODNL1",
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          "hgvs_c": "c.237-19C>T",
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          "transcript": "ENST00000591353.5",
          "protein_id": "ENSP00000468225.1",
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        {
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          "gene_symbol": "PODNL1",
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          "consequences": [
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          "exon_count": 9,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "PODNL1",
          "gene_hgnc_id": 26275,
          "hgvs_c": "c.699-19C>T",
          "hgvs_p": null,
          "transcript": "XM_011528310.3",
          "protein_id": "XP_011526612.1",
          "transcript_support_level": null,
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          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
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          "consequences": [
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          ],
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  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.