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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-1611716-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=1611716&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 1611716,
"ref": "C",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_003200.5",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1956G>T",
"hgvs_p": "p.Gly652Gly",
"transcript": "NM_003200.5",
"protein_id": "NP_003191.1",
"transcript_support_level": null,
"aa_start": 652,
"aa_end": null,
"aa_length": 654,
"cds_start": 1956,
"cds_end": null,
"cds_length": 1965,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000262965.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003200.5"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1956G>T",
"hgvs_p": "p.Gly652Gly",
"transcript": "ENST00000262965.12",
"protein_id": "ENSP00000262965.5",
"transcript_support_level": 1,
"aa_start": 652,
"aa_end": null,
"aa_length": 654,
"cds_start": 1956,
"cds_end": null,
"cds_length": 1965,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_003200.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000262965.12"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1947G>T",
"hgvs_p": "p.Gly649Gly",
"transcript": "NM_001136139.4",
"protein_id": "NP_001129611.1",
"transcript_support_level": null,
"aa_start": 649,
"aa_end": null,
"aa_length": 651,
"cds_start": 1947,
"cds_end": null,
"cds_length": 1956,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": "ENST00000588136.7",
"biotype": "protein_coding",
"feature": "NM_001136139.4"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1947G>T",
"hgvs_p": "p.Gly649Gly",
"transcript": "ENST00000588136.7",
"protein_id": "ENSP00000468487.1",
"transcript_support_level": 2,
"aa_start": 649,
"aa_end": null,
"aa_length": 651,
"cds_start": 1947,
"cds_end": null,
"cds_length": 1956,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": "NM_001136139.4",
"biotype": "protein_coding",
"feature": "ENST00000588136.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "n.1314G>T",
"hgvs_p": null,
"transcript": "ENST00000610756.4",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000610756.4"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.2124G>T",
"hgvs_p": "p.Gly708Gly",
"transcript": "ENST00000931972.1",
"protein_id": "ENSP00000602031.1",
"transcript_support_level": null,
"aa_start": 708,
"aa_end": null,
"aa_length": 710,
"cds_start": 2124,
"cds_end": null,
"cds_length": 2133,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931972.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.2115G>T",
"hgvs_p": "p.Gly705Gly",
"transcript": "ENST00000948466.1",
"protein_id": "ENSP00000618525.1",
"transcript_support_level": null,
"aa_start": 705,
"aa_end": null,
"aa_length": 707,
"cds_start": 2115,
"cds_end": null,
"cds_length": 2124,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948466.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.2043G>T",
"hgvs_p": "p.Gly681Gly",
"transcript": "ENST00000931963.1",
"protein_id": "ENSP00000602022.1",
"transcript_support_level": null,
"aa_start": 681,
"aa_end": null,
"aa_length": 683,
"cds_start": 2043,
"cds_end": null,
"cds_length": 2052,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931963.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.2043G>T",
"hgvs_p": "p.Gly681Gly",
"transcript": "ENST00000931968.1",
"protein_id": "ENSP00000602027.1",
"transcript_support_level": null,
"aa_start": 681,
"aa_end": null,
"aa_length": 683,
"cds_start": 2043,
"cds_end": null,
"cds_length": 2052,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931968.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.2043G>T",
"hgvs_p": "p.Gly681Gly",
"transcript": "ENST00000931970.1",
"protein_id": "ENSP00000602029.1",
"transcript_support_level": null,
"aa_start": 681,
"aa_end": null,
"aa_length": 683,
"cds_start": 2043,
"cds_end": null,
"cds_length": 2052,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931970.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.2040G>T",
"hgvs_p": "p.Gly680Gly",
"transcript": "ENST00000931967.1",
"protein_id": "ENSP00000602026.1",
"transcript_support_level": null,
"aa_start": 680,
"aa_end": null,
"aa_length": 682,
"cds_start": 2040,
"cds_end": null,
"cds_length": 2049,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931967.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.2040G>T",
"hgvs_p": "p.Gly680Gly",
"transcript": "ENST00000931971.1",
"protein_id": "ENSP00000602030.1",
"transcript_support_level": null,
"aa_start": 680,
"aa_end": null,
"aa_length": 682,
"cds_start": 2040,
"cds_end": null,
"cds_length": 2049,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931971.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.2031G>T",
"hgvs_p": "p.Gly677Gly",
"transcript": "ENST00000453954.6",
"protein_id": "ENSP00000396363.3",
"transcript_support_level": 5,
"aa_start": 677,
"aa_end": null,
"aa_length": 679,
"cds_start": 2031,
"cds_end": null,
"cds_length": 2040,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000453954.6"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1968G>T",
"hgvs_p": "p.Gly656Gly",
"transcript": "ENST00000395423.7",
"protein_id": "ENSP00000378813.3",
"transcript_support_level": 5,
"aa_start": 656,
"aa_end": null,
"aa_length": 658,
"cds_start": 1968,
"cds_end": null,
"cds_length": 1977,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000395423.7"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1956G>T",
"hgvs_p": "p.Gly652Gly",
"transcript": "ENST00000863491.1",
"protein_id": "ENSP00000533550.1",
"transcript_support_level": null,
"aa_start": 652,
"aa_end": null,
"aa_length": 654,
"cds_start": 1956,
"cds_end": null,
"cds_length": 1965,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863491.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1956G>T",
"hgvs_p": "p.Gly652Gly",
"transcript": "ENST00000931966.1",
"protein_id": "ENSP00000602025.1",
"transcript_support_level": null,
"aa_start": 652,
"aa_end": null,
"aa_length": 654,
"cds_start": 1956,
"cds_end": null,
"cds_length": 1965,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931966.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1956G>T",
"hgvs_p": "p.Gly652Gly",
"transcript": "ENST00000931973.1",
"protein_id": "ENSP00000602032.1",
"transcript_support_level": null,
"aa_start": 652,
"aa_end": null,
"aa_length": 654,
"cds_start": 1956,
"cds_end": null,
"cds_length": 1965,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931973.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1956G>T",
"hgvs_p": "p.Gly652Gly",
"transcript": "ENST00000931974.1",
"protein_id": "ENSP00000602033.1",
"transcript_support_level": null,
"aa_start": 652,
"aa_end": null,
"aa_length": 654,
"cds_start": 1956,
"cds_end": null,
"cds_length": 1965,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931974.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1953G>T",
"hgvs_p": "p.Gly651Gly",
"transcript": "NM_001351778.2",
"protein_id": "NP_001338707.1",
"transcript_support_level": null,
"aa_start": 651,
"aa_end": null,
"aa_length": 653,
"cds_start": 1953,
"cds_end": null,
"cds_length": 1962,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001351778.2"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1953G>T",
"hgvs_p": "p.Gly651Gly",
"transcript": "ENST00000863492.1",
"protein_id": "ENSP00000533551.1",
"transcript_support_level": null,
"aa_start": 651,
"aa_end": null,
"aa_length": 653,
"cds_start": 1953,
"cds_end": null,
"cds_length": 1962,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000863492.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1953G>T",
"hgvs_p": "p.Gly651Gly",
"transcript": "ENST00000931964.1",
"protein_id": "ENSP00000602023.1",
"transcript_support_level": null,
"aa_start": 651,
"aa_end": null,
"aa_length": 653,
"cds_start": 1953,
"cds_end": null,
"cds_length": 1962,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931964.1"
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF3",
"gene_hgnc_id": 11633,
"hgvs_c": "c.1947G>T",
"hgvs_p": "p.Gly649Gly",
"transcript": "NM_001351779.2",
"protein_id": "NP_001338708.1",
"transcript_support_level": null,
"aa_start": 649,
"aa_end": null,
"aa_length": 651,
"cds_start": 1947,
"cds_end": null,
"cds_length": 1956,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
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