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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-18059998-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=18059998&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 18059998,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000593993.7",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1879G>A",
"hgvs_p": "p.Glu627Lys",
"transcript": "NM_005535.3",
"protein_id": "NP_005526.1",
"transcript_support_level": null,
"aa_start": 627,
"aa_end": null,
"aa_length": 662,
"cds_start": 1879,
"cds_end": null,
"cds_length": 1989,
"cdna_start": 1990,
"cdna_end": null,
"cdna_length": 2713,
"mane_select": "ENST00000593993.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1879G>A",
"hgvs_p": "p.Glu627Lys",
"transcript": "ENST00000593993.7",
"protein_id": "ENSP00000472165.2",
"transcript_support_level": 1,
"aa_start": 627,
"aa_end": null,
"aa_length": 662,
"cds_start": 1879,
"cds_end": null,
"cds_length": 1989,
"cdna_start": 1990,
"cdna_end": null,
"cdna_length": 2713,
"mane_select": "NM_005535.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1879G>A",
"hgvs_p": "p.Glu627Lys",
"transcript": "ENST00000600835.6",
"protein_id": "ENSP00000470788.1",
"transcript_support_level": 1,
"aa_start": 627,
"aa_end": null,
"aa_length": 662,
"cds_start": 1879,
"cds_end": null,
"cds_length": 1989,
"cdna_start": 2178,
"cdna_end": null,
"cdna_length": 2901,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1999G>A",
"hgvs_p": "p.Glu667Lys",
"transcript": "NM_001290024.2",
"protein_id": "NP_001276953.1",
"transcript_support_level": null,
"aa_start": 667,
"aa_end": null,
"aa_length": 702,
"cds_start": 1999,
"cds_end": null,
"cds_length": 2109,
"cdna_start": 2161,
"cdna_end": null,
"cdna_length": 2884,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1900G>A",
"hgvs_p": "p.Glu634Lys",
"transcript": "NM_001440424.1",
"protein_id": "NP_001427353.1",
"transcript_support_level": null,
"aa_start": 634,
"aa_end": null,
"aa_length": 669,
"cds_start": 1900,
"cds_end": null,
"cds_length": 2010,
"cdna_start": 2011,
"cdna_end": null,
"cdna_length": 2734,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1900G>A",
"hgvs_p": "p.Glu634Lys",
"transcript": "NM_001440425.1",
"protein_id": "NP_001427354.1",
"transcript_support_level": null,
"aa_start": 634,
"aa_end": null,
"aa_length": 667,
"cds_start": 1900,
"cds_end": null,
"cds_length": 2004,
"cdna_start": 2011,
"cdna_end": null,
"cdna_length": 2721,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1879G>A",
"hgvs_p": "p.Glu627Lys",
"transcript": "NM_001290023.2",
"protein_id": "NP_001276952.1",
"transcript_support_level": null,
"aa_start": 627,
"aa_end": null,
"aa_length": 660,
"cds_start": 1879,
"cds_end": null,
"cds_length": 1983,
"cdna_start": 1990,
"cdna_end": null,
"cdna_length": 2700,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2032G>A",
"hgvs_p": "p.Glu678Lys",
"transcript": "XM_011527966.3",
"protein_id": "XP_011526268.1",
"transcript_support_level": null,
"aa_start": 678,
"aa_end": null,
"aa_length": 745,
"cds_start": 2032,
"cds_end": null,
"cds_length": 2238,
"cdna_start": 2083,
"cdna_end": null,
"cdna_length": 2936,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2020G>A",
"hgvs_p": "p.Glu674Lys",
"transcript": "XM_011527967.3",
"protein_id": "XP_011526269.1",
"transcript_support_level": null,
"aa_start": 674,
"aa_end": null,
"aa_length": 741,
"cds_start": 2020,
"cds_end": null,
"cds_length": 2226,
"cdna_start": 2071,
"cdna_end": null,
"cdna_length": 2924,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2011G>A",
"hgvs_p": "p.Glu671Lys",
"transcript": "XM_011527968.4",
"protein_id": "XP_011526270.1",
"transcript_support_level": null,
"aa_start": 671,
"aa_end": null,
"aa_length": 738,
"cds_start": 2011,
"cds_end": null,
"cds_length": 2217,
"cdna_start": 2062,
"cdna_end": null,
"cdna_length": 2915,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1999G>A",
"hgvs_p": "p.Glu667Lys",
"transcript": "XM_011527969.3",
"protein_id": "XP_011526271.1",
"transcript_support_level": null,
"aa_start": 667,
"aa_end": null,
"aa_length": 734,
"cds_start": 1999,
"cds_end": null,
"cds_length": 2205,
"cdna_start": 2050,
"cdna_end": null,
"cdna_length": 2903,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2032G>A",
"hgvs_p": "p.Glu678Lys",
"transcript": "XM_011527970.3",
"protein_id": "XP_011526272.1",
"transcript_support_level": null,
"aa_start": 678,
"aa_end": null,
"aa_length": 725,
"cds_start": 2032,
"cds_end": null,
"cds_length": 2178,
"cdna_start": 2083,
"cdna_end": null,
"cdna_length": 2949,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2020G>A",
"hgvs_p": "p.Glu674Lys",
"transcript": "XM_047438767.1",
"protein_id": "XP_047294723.1",
"transcript_support_level": null,
"aa_start": 674,
"aa_end": null,
"aa_length": 721,
"cds_start": 2020,
"cds_end": null,
"cds_length": 2166,
"cdna_start": 2071,
"cdna_end": null,
"cdna_length": 2937,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1999G>A",
"hgvs_p": "p.Glu667Lys",
"transcript": "XM_006722741.4",
"protein_id": "XP_006722804.2",
"transcript_support_level": null,
"aa_start": 667,
"aa_end": null,
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"cds_start": 1999,
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"cdna_start": 2050,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2032G>A",
"hgvs_p": "p.Glu678Lys",
"transcript": "XM_011527971.4",
"protein_id": "XP_011526273.1",
"transcript_support_level": null,
"aa_start": 678,
"aa_end": null,
"aa_length": 713,
"cds_start": 2032,
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"cds_length": 2142,
"cdna_start": 2083,
"cdna_end": null,
"cdna_length": 2806,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2032G>A",
"hgvs_p": "p.Glu678Lys",
"transcript": "XM_011527972.4",
"protein_id": "XP_011526274.1",
"transcript_support_level": null,
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"cds_start": 2032,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2011G>A",
"hgvs_p": "p.Glu671Lys",
"transcript": "XM_047438768.1",
"protein_id": "XP_047294724.1",
"transcript_support_level": null,
"aa_start": 671,
"aa_end": null,
"aa_length": 706,
"cds_start": 2011,
"cds_end": null,
"cds_length": 2121,
"cdna_start": 2062,
"cdna_end": null,
"cdna_length": 2785,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1912G>A",
"hgvs_p": "p.Glu638Lys",
"transcript": "XM_047438769.1",
"protein_id": "XP_047294725.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 705,
"cds_start": 1912,
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"cds_length": 2118,
"cdna_start": 2203,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
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"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.2011G>A",
"hgvs_p": "p.Glu671Lys",
"transcript": "XM_047438770.1",
"protein_id": "XP_047294726.1",
"transcript_support_level": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1999G>A",
"hgvs_p": "p.Glu667Lys",
"transcript": "XM_011527975.3",
"protein_id": "XP_011526277.1",
"transcript_support_level": null,
"aa_start": 667,
"aa_end": null,
"aa_length": 700,
"cds_start": 1999,
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"cdna_start": 2050,
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"mane_select": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"hgvs_c": "c.1297G>A",
"hgvs_p": "p.Glu433Lys",
"transcript": "XM_017026762.2",
"protein_id": "XP_016882251.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 500,
"cds_start": 1297,
"cds_end": null,
"cds_length": 1503,
"cdna_start": 1434,
"cdna_end": null,
"cdna_length": 2287,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "IL12RB1",
"gene_hgnc_id": 5971,
"dbsnp": "rs143367415",
"frequency_reference_population": 0.0005921913,
"hom_count_reference_population": 1,
"allele_count_reference_population": 948,
"gnomad_exomes_af": 0.000606825,
"gnomad_genomes_af": 0.000453023,
"gnomad_exomes_ac": 879,
"gnomad_genomes_ac": 69,
"gnomad_exomes_homalt": 1,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.005658984184265137,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.194,
"revel_prediction": "Benign",
"alphamissense_score": 0.0734,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.38,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.075,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -16,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BS1",
"acmg_by_gene": [
{
"score": -16,
"benign_score": 16,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BS1"
],
"verdict": "Benign",
"transcript": "ENST00000593993.7",
"gene_symbol": "IL12RB1",
"hgnc_id": 5971,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1879G>A",
"hgvs_p": "p.Glu627Lys"
}
],
"clinvar_disease": "IL12RB1-related disorder,Mendelian susceptibility to mycobacterial diseases due to complete IL12RB1 deficiency,not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:3",
"phenotype_combined": "Mendelian susceptibility to mycobacterial diseases due to complete IL12RB1 deficiency|IL12RB1-related disorder|not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}