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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-19145890-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=19145890&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 19145890,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000514819.7",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "H",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "c.953C>A",
"hgvs_p": "p.Pro318His",
"transcript": "ENST00000514819.7",
"protein_id": "ENSP00000454967.3",
"transcript_support_level": 5,
"aa_start": 318,
"aa_end": null,
"aa_length": 382,
"cds_start": 953,
"cds_end": null,
"cds_length": 1149,
"cdna_start": 1100,
"cdna_end": null,
"cdna_length": 1406,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEF2B",
"gene_hgnc_id": 6995,
"hgvs_c": "c.1014C>A",
"hgvs_p": "p.Pro338Pro",
"transcript": "NM_001145785.2",
"protein_id": "NP_001139257.1",
"transcript_support_level": null,
"aa_start": 338,
"aa_end": null,
"aa_length": 368,
"cds_start": 1014,
"cds_end": null,
"cds_length": 1107,
"cdna_start": 1102,
"cdna_end": null,
"cdna_length": 1425,
"mane_select": "ENST00000424583.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEF2B",
"gene_hgnc_id": 6995,
"hgvs_c": "c.1014C>A",
"hgvs_p": "p.Pro338Pro",
"transcript": "ENST00000424583.7",
"protein_id": "ENSP00000402154.2",
"transcript_support_level": 5,
"aa_start": 338,
"aa_end": null,
"aa_length": 368,
"cds_start": 1014,
"cds_end": null,
"cds_length": 1107,
"cdna_start": 1102,
"cdna_end": null,
"cdna_length": 1425,
"mane_select": "NM_001145785.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEF2B",
"gene_hgnc_id": 6995,
"hgvs_c": "c.902C>A",
"hgvs_p": "p.Pro301His",
"transcript": "NM_001367282.1",
"protein_id": "NP_001354211.1",
"transcript_support_level": null,
"aa_start": 301,
"aa_end": null,
"aa_length": 365,
"cds_start": 902,
"cds_end": null,
"cds_length": 1098,
"cdna_start": 990,
"cdna_end": null,
"cdna_length": 1313,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "c.902C>A",
"hgvs_p": "p.Pro301His",
"transcript": "NM_005919.4",
"protein_id": "NP_005910.1",
"transcript_support_level": null,
"aa_start": 301,
"aa_end": null,
"aa_length": 365,
"cds_start": 902,
"cds_end": null,
"cds_length": 1098,
"cdna_start": 1190,
"cdna_end": null,
"cdna_length": 1513,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEF2B",
"gene_hgnc_id": 6995,
"hgvs_c": "c.902C>A",
"hgvs_p": "p.Pro301His",
"transcript": "ENST00000444486.7",
"protein_id": "ENSP00000390762.2",
"transcript_support_level": 2,
"aa_start": 301,
"aa_end": null,
"aa_length": 365,
"cds_start": 902,
"cds_end": null,
"cds_length": 1098,
"cdna_start": 1169,
"cdna_end": null,
"cdna_length": 1492,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEF2B",
"gene_hgnc_id": 6995,
"hgvs_c": "c.1035C>A",
"hgvs_p": "p.Pro345Pro",
"transcript": "ENST00000410050.5",
"protein_id": "ENSP00000386374.1",
"transcript_support_level": 5,
"aa_start": 345,
"aa_end": null,
"aa_length": 375,
"cds_start": 1035,
"cds_end": null,
"cds_length": 1128,
"cdna_start": 1108,
"cdna_end": null,
"cdna_length": 1429,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEF2B",
"gene_hgnc_id": 6995,
"hgvs_c": "c.768C>A",
"hgvs_p": "p.Pro256Pro",
"transcript": "ENST00000409447.2",
"protein_id": "ENSP00000386784.2",
"transcript_support_level": 3,
"aa_start": 256,
"aa_end": null,
"aa_length": 286,
"cds_start": 768,
"cds_end": null,
"cds_length": 861,
"cdna_start": 1000,
"cdna_end": null,
"cdna_length": 1297,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "n.*973C>A",
"hgvs_p": null,
"transcript": "ENST00000354191.8",
"protein_id": "ENSP00000457957.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1695,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "n.*1085C>A",
"hgvs_p": null,
"transcript": "ENST00000602804.5",
"protein_id": "ENSP00000473577.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1804,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "n.*973C>A",
"hgvs_p": null,
"transcript": "ENST00000630940.2",
"protein_id": "ENSP00000486975.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1664,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "n.1480C>A",
"hgvs_p": null,
"transcript": "NR_027307.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1803,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "n.1368C>A",
"hgvs_p": null,
"transcript": "NR_027308.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1691,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MEF2B",
"gene_hgnc_id": 6995,
"hgvs_c": "c.*379C>A",
"hgvs_p": null,
"transcript": "ENST00000409224.5",
"protein_id": "ENSP00000386480.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 297,
"cds_start": -4,
"cds_end": null,
"cds_length": 894,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1683,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "n.*973C>A",
"hgvs_p": null,
"transcript": "ENST00000354191.8",
"protein_id": "ENSP00000457957.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1695,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "n.*1085C>A",
"hgvs_p": null,
"transcript": "ENST00000602804.5",
"protein_id": "ENSP00000473577.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1804,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"hgvs_c": "n.*973C>A",
"hgvs_p": null,
"transcript": "ENST00000630940.2",
"protein_id": "ENSP00000486975.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1664,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "BORCS8-MEF2B",
"gene_hgnc_id": 39979,
"dbsnp": "rs2060021038",
"frequency_reference_population": 7.6197443e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 7.61974e-7,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.10031911730766296,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.361,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.0969,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.05,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": -0.637,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000514819.7",
"gene_symbol": "BORCS8-MEF2B",
"hgnc_id": 39979,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.953C>A",
"hgvs_p": "p.Pro318His"
},
{
"score": -1,
"benign_score": 3,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate",
"BP7"
],
"verdict": "Likely_benign",
"transcript": "ENST00000424583.7",
"gene_symbol": "MEF2B",
"hgnc_id": 6995,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.1014C>A",
"hgvs_p": "p.Pro338Pro"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}