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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-19626656-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=19626656&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM2",
"PP3"
],
"effects": [
"missense_variant"
],
"gene_symbol": "LPAR2",
"hgnc_id": 3168,
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"inheritance_mode": "AD",
"pathogenic_score": 3,
"score": 3,
"transcript": "NM_001395660.1",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP3",
"acmg_score": 3,
"allele_count_reference_population": 1,
"alphamissense_prediction": null,
"alphamissense_score": 0.4946,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.29,
"chr": "19",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": "Pathogenic",
"computational_score_selected": 0.7746425867080688,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1786,
"cdna_start": 758,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 3,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001395660.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000407877.8",
"protein_coding": true,
"protein_id": "NP_001382589.1",
"strand": false,
"transcript": "NM_001395660.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 1786,
"cdna_start": 758,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 3,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000407877.8",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001395660.1",
"protein_coding": true,
"protein_id": "ENSP00000384665.3",
"strand": false,
"transcript": "ENST00000407877.8",
"transcript_support_level": 1
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 2546,
"cdna_start": 1532,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000542587.5",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000443256.2",
"strand": false,
"transcript": "ENST00000542587.5",
"transcript_support_level": 2
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1823,
"cdna_start": 808,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 3,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000586703.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000465280.2",
"strand": false,
"transcript": "ENST00000586703.1",
"transcript_support_level": 1
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2161,
"cdna_start": 1147,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 3,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000862318.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000532377.1",
"strand": false,
"transcript": "ENST00000862318.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1991,
"cdna_start": 977,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000862319.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000532378.1",
"strand": false,
"transcript": "ENST00000862319.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1906,
"cdna_start": 892,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000862320.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000532379.1",
"strand": false,
"transcript": "ENST00000862320.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2124,
"cdna_start": 1110,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000862321.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000532380.1",
"strand": false,
"transcript": "ENST00000862321.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2125,
"cdna_start": 1111,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000862322.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000532381.1",
"strand": false,
"transcript": "ENST00000862322.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1877,
"cdna_start": 863,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 3,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000862323.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000532382.1",
"strand": false,
"transcript": "ENST00000862323.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2083,
"cdna_start": 1069,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000862324.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000532383.1",
"strand": false,
"transcript": "ENST00000862324.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2500,
"cdna_start": 1487,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 2,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000862325.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000532384.1",
"strand": false,
"transcript": "ENST00000862325.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1942,
"cdna_start": 898,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000914000.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000584059.1",
"strand": false,
"transcript": "ENST00000914000.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1826,
"cdna_start": 798,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 3,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000914001.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000584060.1",
"strand": false,
"transcript": "ENST00000914001.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2478,
"cdna_start": 1450,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000914002.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000584061.1",
"strand": false,
"transcript": "ENST00000914002.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1932,
"cdna_start": 904,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000914003.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000584062.1",
"strand": false,
"transcript": "ENST00000914003.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2221,
"cdna_start": 1203,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000914004.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000584063.1",
"strand": false,
"transcript": "ENST00000914004.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2216,
"cdna_start": 1202,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000914005.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000584064.1",
"strand": false,
"transcript": "ENST00000914005.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2205,
"cdna_start": 1177,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000914006.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000584065.1",
"strand": false,
"transcript": "ENST00000914006.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2208,
"cdna_start": 1194,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000914007.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000584066.1",
"strand": false,
"transcript": "ENST00000914007.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 348,
"aa_ref": "R",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2110,
"cdna_start": 1096,
"cds_end": null,
"cds_length": 1047,
"cds_start": 620,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000914008.1",
"gene_hgnc_id": 3168,
"gene_symbol": "LPAR2",
"hgvs_c": "c.620G>T",
"hgvs_p": "p.Arg207Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
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