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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-1978706-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=1978706&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 1978706,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_001319.7",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "NM_001319.7",
"protein_id": "NP_001310.3",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000255641.13",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319.7"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000255641.13",
"protein_id": "ENSP00000255641.7",
"transcript_support_level": 1,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001319.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000255641.13"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000890345.1",
"protein_id": "ENSP00000560404.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000890345.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000890346.1",
"protein_id": "ENSP00000560405.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000890346.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000890347.1",
"protein_id": "ENSP00000560406.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000890347.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000935017.1",
"protein_id": "ENSP00000605076.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935017.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000935018.1",
"protein_id": "ENSP00000605077.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935018.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000935020.1",
"protein_id": "ENSP00000605079.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935020.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000935024.1",
"protein_id": "ENSP00000605083.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935024.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000935025.1",
"protein_id": "ENSP00000605084.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935025.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000949202.1",
"protein_id": "ENSP00000619261.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000949202.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000949203.1",
"protein_id": "ENSP00000619262.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000949203.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000949204.1",
"protein_id": "ENSP00000619263.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 415,
"cds_start": 403,
"cds_end": null,
"cds_length": 1248,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000949204.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.400C>G",
"hgvs_p": "p.Arg134Gly",
"transcript": "ENST00000935021.1",
"protein_id": "ENSP00000605080.1",
"transcript_support_level": null,
"aa_start": 134,
"aa_end": null,
"aa_length": 414,
"cds_start": 400,
"cds_end": null,
"cds_length": 1245,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935021.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000935016.1",
"protein_id": "ENSP00000605075.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 401,
"cds_start": 403,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935016.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly",
"transcript": "ENST00000935019.1",
"protein_id": "ENSP00000605078.1",
"transcript_support_level": null,
"aa_start": 135,
"aa_end": null,
"aa_length": 387,
"cds_start": 403,
"cds_end": null,
"cds_length": 1164,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000935019.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.445C>G",
"hgvs_p": "p.Arg149Gly",
"transcript": "ENST00000589385.5",
"protein_id": "ENSP00000468637.1",
"transcript_support_level": 5,
"aa_start": 149,
"aa_end": null,
"aa_length": 297,
"cds_start": 445,
"cds_end": null,
"cds_length": 895,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000589385.5"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.253C>G",
"hgvs_p": "p.Arg85Gly",
"transcript": "ENST00000585959.2",
"protein_id": "ENSP00000480185.1",
"transcript_support_level": 2,
"aa_start": 85,
"aa_end": null,
"aa_length": 233,
"cds_start": 253,
"cds_end": null,
"cds_length": 703,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000585959.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.253C>G",
"hgvs_p": "p.Arg85Gly",
"transcript": "ENST00000591002.5",
"protein_id": "ENSP00000480929.1",
"transcript_support_level": 3,
"aa_start": 85,
"aa_end": null,
"aa_length": 204,
"cds_start": 253,
"cds_end": null,
"cds_length": 616,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000591002.5"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.493C>G",
"hgvs_p": "p.Arg165Gly",
"transcript": "XM_005259498.2",
"protein_id": "XP_005259555.1",
"transcript_support_level": null,
"aa_start": 165,
"aa_end": null,
"aa_length": 445,
"cds_start": 493,
"cds_end": null,
"cds_length": 1338,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005259498.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.493C>G",
"hgvs_p": "p.Arg165Gly",
"transcript": "XM_005259499.4",
"protein_id": "XP_005259556.1",
"transcript_support_level": null,
"aa_start": 165,
"aa_end": null,
"aa_length": 445,
"cds_start": 493,
"cds_end": null,
"cds_length": 1338,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005259499.4"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSNK1G2",
"gene_hgnc_id": 2455,
"hgvs_c": "c.493C>G",
"hgvs_p": "p.Arg165Gly",
"transcript": "XM_047438184.1",
"protein_id": "XP_047294140.1",
"transcript_support_level": null,
"aa_start": 165,
"aa_end": null,
"aa_length": 445,
"cds_start": 493,
"cds_end": null,
"cds_length": 1338,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
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{
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],
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{
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],
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"gene_symbol": "CSNK1G2",
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"biotype": "retained_intron",
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],
"gene_symbol": "CSNK1G2",
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"dbsnp": "rs761629089",
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"hom_count_reference_population": 0,
"allele_count_reference_population": 3,
"gnomad_exomes_af": 0.0000020801,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 3,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.8613457679748535,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.428,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.9937,
"alphamissense_prediction": "Pathogenic",
"bayesdelnoaf_score": -0.08,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 2.156,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
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"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 4,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP3_Moderate",
"acmg_by_gene": [
{
"score": 4,
"benign_score": 0,
"pathogenic_score": 4,
"criteria": [
"PM2",
"PP3_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001319.7",
"gene_symbol": "CSNK1G2",
"hgnc_id": 2455,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.403C>G",
"hgvs_p": "p.Arg135Gly"
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],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}