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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-3530839-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=3530839&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 9,
"criteria": [
"BP4_Moderate",
"BP6_Moderate",
"BP7",
"BS2"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "FZR1",
"hgnc_id": 24824,
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"inheritance_mode": "AD",
"pathogenic_score": 0,
"score": -9,
"transcript": "NM_001136198.1",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Moderate,BP6_Moderate,BP7,BS2",
"acmg_score": -9,
"allele_count_reference_population": 869,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.35,
"chr": "19",
"clinvar_classification": "Benign",
"clinvar_disease": "not provided",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "B:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": -0.3499999940395355,
"computational_source_selected": "BayesDel_noAF",
"consequences": [
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5178,
"cdna_start": 900,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_016263.4",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000441788.7",
"protein_coding": true,
"protein_id": "NP_057347.2",
"strand": true,
"transcript": "NM_016263.4",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 5178,
"cdna_start": 900,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000441788.7",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_016263.4",
"protein_coding": true,
"protein_id": "ENSP00000410369.1",
"strand": true,
"transcript": "ENST00000441788.7",
"transcript_support_level": 1
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 496,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1491,
"cdna_start": 702,
"cds_end": null,
"cds_length": 1491,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000395095.7",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000378529.2",
"strand": true,
"transcript": "ENST00000395095.7",
"transcript_support_level": 1
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 404,
"aa_ref": "S",
"aa_start": 145,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1215,
"cdna_start": 435,
"cds_end": null,
"cds_length": 1215,
"cds_start": 435,
"consequences": [
"synonymous_variant"
],
"exon_count": 11,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000313639.8",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.435C>T",
"hgvs_p": "p.Ser145Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000321800.7",
"strand": true,
"transcript": "ENST00000313639.8",
"transcript_support_level": 1
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 536,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3180,
"cdna_start": 915,
"cds_end": null,
"cds_length": 1611,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000928283.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000598342.1",
"strand": true,
"transcript": "ENST00000928283.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 533,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3151,
"cdna_start": 894,
"cds_end": null,
"cds_length": 1602,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000876601.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000546660.1",
"strand": true,
"transcript": "ENST00000876601.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 515,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3117,
"cdna_start": 913,
"cds_end": null,
"cds_length": 1548,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000876599.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000546658.1",
"strand": true,
"transcript": "ENST00000876599.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 496,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3446,
"cdna_start": 736,
"cds_end": null,
"cds_length": 1491,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "NM_001136198.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001129670.1",
"strand": true,
"transcript": "NM_001136198.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3503,
"cdna_start": 1557,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 16,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "ENST00000652521.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000498659.1",
"strand": true,
"transcript": "ENST00000652521.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3118,
"cdna_start": 980,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000876600.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000546659.1",
"strand": true,
"transcript": "ENST00000876600.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1966,
"cdna_start": 1018,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000876604.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000546663.1",
"strand": true,
"transcript": "ENST00000876604.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3622,
"cdna_start": 1491,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000876605.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000546664.1",
"strand": true,
"transcript": "ENST00000876605.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5316,
"cdna_start": 1044,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000928282.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000598341.1",
"strand": true,
"transcript": "ENST00000928282.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2082,
"cdna_start": 1132,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000928284.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000598343.1",
"strand": true,
"transcript": "ENST00000928284.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3631,
"cdna_start": 1500,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000928286.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000598345.1",
"strand": true,
"transcript": "ENST00000928286.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3731,
"cdna_start": 1031,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000951911.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621970.1",
"strand": true,
"transcript": "ENST00000951911.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3104,
"cdna_start": 968,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000951912.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621971.1",
"strand": true,
"transcript": "ENST00000951912.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 493,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2540,
"cdna_start": 873,
"cds_end": null,
"cds_length": 1482,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000951913.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000621972.1",
"strand": true,
"transcript": "ENST00000951913.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 475,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1796,
"cdna_start": 900,
"cds_end": null,
"cds_length": 1428,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000876603.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000546662.1",
"strand": true,
"transcript": "ENST00000876603.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 472,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3563,
"cdna_start": 934,
"cds_end": null,
"cds_length": 1419,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000876598.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000546657.1",
"strand": true,
"transcript": "ENST00000876598.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 472,
"aa_ref": "S",
"aa_start": 234,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3115,
"cdna_start": 1048,
"cds_end": null,
"cds_length": 1419,
"cds_start": 702,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000876602.1",
"gene_hgnc_id": 24824,
"gene_symbol": "FZR1",
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Ser234Ser",
"intron_rank": null,
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