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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-36546979-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=36546979&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 36546979,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_020951.5",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "NM_020951.5",
"protein_id": "NP_066002.3",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000591340.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_020951.5"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "ENST00000591340.6",
"protein_id": "ENSP00000465578.1",
"transcript_support_level": 1,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_020951.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000591340.6"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "NM_001145649.2",
"protein_id": "NP_001139121.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001145649.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "ENST00000867184.1",
"protein_id": "ENSP00000537243.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867184.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "ENST00000867185.1",
"protein_id": "ENSP00000537244.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867185.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "ENST00000867186.1",
"protein_id": "ENSP00000537245.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867186.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "ENST00000867187.1",
"protein_id": "ENSP00000537246.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867187.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "ENST00000933095.1",
"protein_id": "ENSP00000603154.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933095.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1525A>G",
"hgvs_p": "p.Ile509Val",
"transcript": "NM_001145650.2",
"protein_id": "NP_001139122.1",
"transcript_support_level": null,
"aa_start": 509,
"aa_end": null,
"aa_length": 545,
"cds_start": 1525,
"cds_end": null,
"cds_length": 1638,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001145650.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1264A>G",
"hgvs_p": "p.Ile422Val",
"transcript": "NM_001321351.2",
"protein_id": "NP_001308280.1",
"transcript_support_level": null,
"aa_start": 422,
"aa_end": null,
"aa_length": 458,
"cds_start": 1264,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321351.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1264A>G",
"hgvs_p": "p.Ile422Val",
"transcript": "NM_001352272.2",
"protein_id": "NP_001339201.1",
"transcript_support_level": null,
"aa_start": 422,
"aa_end": null,
"aa_length": 458,
"cds_start": 1264,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001352272.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1264A>G",
"hgvs_p": "p.Ile422Val",
"transcript": "NM_001352273.2",
"protein_id": "NP_001339202.1",
"transcript_support_level": null,
"aa_start": 422,
"aa_end": null,
"aa_length": 458,
"cds_start": 1264,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001352273.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1264A>G",
"hgvs_p": "p.Ile422Val",
"transcript": "ENST00000334116.7",
"protein_id": "ENSP00000334695.7",
"transcript_support_level": 2,
"aa_start": 422,
"aa_end": null,
"aa_length": 458,
"cds_start": 1264,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000334116.7"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "XM_006723302.5",
"protein_id": "XP_006723365.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006723302.5"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val",
"transcript": "XM_011527164.4",
"protein_id": "XP_011525466.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 563,
"cds_start": 1579,
"cds_end": null,
"cds_length": 1692,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011527164.4"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1525A>G",
"hgvs_p": "p.Ile509Val",
"transcript": "XM_011527165.4",
"protein_id": "XP_011525467.1",
"transcript_support_level": null,
"aa_start": 509,
"aa_end": null,
"aa_length": 545,
"cds_start": 1525,
"cds_end": null,
"cds_length": 1638,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011527165.4"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1372A>G",
"hgvs_p": "p.Ile458Val",
"transcript": "XM_047439140.1",
"protein_id": "XP_047295096.1",
"transcript_support_level": null,
"aa_start": 458,
"aa_end": null,
"aa_length": 494,
"cds_start": 1372,
"cds_end": null,
"cds_length": 1485,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047439140.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.1264A>G",
"hgvs_p": "p.Ile422Val",
"transcript": "XM_047439141.1",
"protein_id": "XP_047295097.1",
"transcript_support_level": null,
"aa_start": 422,
"aa_end": null,
"aa_length": 458,
"cds_start": 1264,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047439141.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.205+579A>G",
"hgvs_p": null,
"transcript": "ENST00000452073.2",
"protein_id": "ENSP00000465917.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 111,
"cds_start": null,
"cds_end": null,
"cds_length": 336,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000452073.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"hgvs_c": "c.139+411A>G",
"hgvs_p": null,
"transcript": "ENST00000590656.1",
"protein_id": "ENSP00000468594.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 72,
"cds_start": null,
"cds_end": null,
"cds_length": 219,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000590656.1"
}
],
"gene_symbol": "ZNF529",
"gene_hgnc_id": 29328,
"dbsnp": "rs372917053",
"frequency_reference_population": 0.000014250028,
"hom_count_reference_population": 0,
"allele_count_reference_population": 23,
"gnomad_exomes_af": 0.0000123144,
"gnomad_genomes_af": 0.0000328235,
"gnomad_exomes_ac": 18,
"gnomad_genomes_ac": 5,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.048497021198272705,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.004,
"revel_prediction": "Benign",
"alphamissense_score": 0.1836,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.71,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.583,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_020951.5",
"gene_symbol": "ZNF529",
"hgnc_id": 29328,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1579A>G",
"hgvs_p": "p.Ile527Val"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}