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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-38879190-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=38879190&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 38879190,
"ref": "C",
"alt": "A",
"effect": "stop_gained",
"transcript": "NM_012237.4",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1135G>T",
"hgvs_p": "p.Glu379*",
"transcript": "NM_012237.4",
"protein_id": "NP_036369.2",
"transcript_support_level": null,
"aa_start": 379,
"aa_end": null,
"aa_length": 389,
"cds_start": 1135,
"cds_end": null,
"cds_length": 1170,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000249396.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_012237.4"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1135G>T",
"hgvs_p": "p.Glu379*",
"transcript": "ENST00000249396.12",
"protein_id": "ENSP00000249396.7",
"transcript_support_level": 1,
"aa_start": 379,
"aa_end": null,
"aa_length": 389,
"cds_start": 1135,
"cds_end": null,
"cds_length": 1170,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_012237.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000249396.12"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1024G>T",
"hgvs_p": "p.Glu342*",
"transcript": "ENST00000392081.6",
"protein_id": "ENSP00000375931.2",
"transcript_support_level": 1,
"aa_start": 342,
"aa_end": null,
"aa_length": 352,
"cds_start": 1024,
"cds_end": null,
"cds_length": 1059,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000392081.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "n.1906G>T",
"hgvs_p": null,
"transcript": "ENST00000462654.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000462654.5"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1132G>T",
"hgvs_p": "p.Glu378*",
"transcript": "ENST00000872149.1",
"protein_id": "ENSP00000542208.1",
"transcript_support_level": null,
"aa_start": 378,
"aa_end": null,
"aa_length": 388,
"cds_start": 1132,
"cds_end": null,
"cds_length": 1167,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000872149.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1129G>T",
"hgvs_p": "p.Glu377*",
"transcript": "ENST00000872147.1",
"protein_id": "ENSP00000542206.1",
"transcript_support_level": null,
"aa_start": 377,
"aa_end": null,
"aa_length": 387,
"cds_start": 1129,
"cds_end": null,
"cds_length": 1164,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000872147.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1087G>T",
"hgvs_p": "p.Glu363*",
"transcript": "ENST00000872146.1",
"protein_id": "ENSP00000542205.1",
"transcript_support_level": null,
"aa_start": 363,
"aa_end": null,
"aa_length": 373,
"cds_start": 1087,
"cds_end": null,
"cds_length": 1122,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000872146.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1057G>T",
"hgvs_p": "p.Glu353*",
"transcript": "ENST00000872151.1",
"protein_id": "ENSP00000542210.1",
"transcript_support_level": null,
"aa_start": 353,
"aa_end": null,
"aa_length": 363,
"cds_start": 1057,
"cds_end": null,
"cds_length": 1092,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000872151.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1039G>T",
"hgvs_p": "p.Glu347*",
"transcript": "ENST00000872150.1",
"protein_id": "ENSP00000542209.1",
"transcript_support_level": null,
"aa_start": 347,
"aa_end": null,
"aa_length": 357,
"cds_start": 1039,
"cds_end": null,
"cds_length": 1074,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000872150.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1024G>T",
"hgvs_p": "p.Glu342*",
"transcript": "NM_030593.3",
"protein_id": "NP_085096.1",
"transcript_support_level": null,
"aa_start": 342,
"aa_end": null,
"aa_length": 352,
"cds_start": 1024,
"cds_end": null,
"cds_length": 1059,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_030593.3"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1021G>T",
"hgvs_p": "p.Glu341*",
"transcript": "ENST00000941837.1",
"protein_id": "ENSP00000611896.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 351,
"cds_start": 1021,
"cds_end": null,
"cds_length": 1056,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000941837.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.925G>T",
"hgvs_p": "p.Glu309*",
"transcript": "ENST00000872145.1",
"protein_id": "ENSP00000542204.1",
"transcript_support_level": null,
"aa_start": 309,
"aa_end": null,
"aa_length": 319,
"cds_start": 925,
"cds_end": null,
"cds_length": 960,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000872145.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.922G>T",
"hgvs_p": "p.Glu308*",
"transcript": "ENST00000941836.1",
"protein_id": "ENSP00000611895.1",
"transcript_support_level": null,
"aa_start": 308,
"aa_end": null,
"aa_length": 318,
"cds_start": 922,
"cds_end": null,
"cds_length": 957,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000941836.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.919G>T",
"hgvs_p": "p.Glu307*",
"transcript": "ENST00000872148.1",
"protein_id": "ENSP00000542207.1",
"transcript_support_level": null,
"aa_start": 307,
"aa_end": null,
"aa_length": 317,
"cds_start": 919,
"cds_end": null,
"cds_length": 954,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000872148.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.1024G>T",
"hgvs_p": "p.Glu342*",
"transcript": "XM_047438468.1",
"protein_id": "XP_047294424.1",
"transcript_support_level": null,
"aa_start": 342,
"aa_end": null,
"aa_length": 352,
"cds_start": 1024,
"cds_end": null,
"cds_length": 1059,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047438468.1"
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.925G>T",
"hgvs_p": "p.Glu309*",
"transcript": "XM_011526655.2",
"protein_id": "XP_011524957.1",
"transcript_support_level": null,
"aa_start": 309,
"aa_end": null,
"aa_length": 319,
"cds_start": 925,
"cds_end": null,
"cds_length": 960,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011526655.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.*167G>T",
"hgvs_p": null,
"transcript": "NM_001193286.2",
"protein_id": "NP_001180215.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 234,
"cds_start": null,
"cds_end": null,
"cds_length": 705,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001193286.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "c.*167G>T",
"hgvs_p": null,
"transcript": "ENST00000358931.9",
"protein_id": "ENSP00000351809.6",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 234,
"cds_start": null,
"cds_end": null,
"cds_length": 705,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000358931.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "n.4101G>T",
"hgvs_p": null,
"transcript": "ENST00000479290.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000479290.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "n.*1002G>T",
"hgvs_p": null,
"transcript": "ENST00000851047.1",
"protein_id": "ENSP00000521116.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000851047.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "n.1360G>T",
"hgvs_p": null,
"transcript": "NR_034146.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_034146.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SIRT2",
"gene_hgnc_id": 10886,
"hgvs_c": "n.*1002G>T",
"hgvs_p": null,
"transcript": "ENST00000851047.1",
"protein_id": "ENSP00000521116.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000851047.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
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"exon_count": 3,
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"biotype": "retained_intron",
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],
"gene_symbol": "SIRT2",
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"dbsnp": "rs202127838",
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"allele_count_reference_population": 1,
"gnomad_exomes_af": 6.96971e-7,
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"gnomad_exomes_ac": 1,
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"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.03400000184774399,
"computational_prediction_selected": "Benign",
"computational_source_selected": "REVEL",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.034,
"revel_prediction": "Benign",
"alphamissense_score": 0.0884,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.28,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 0.94,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
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"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_012237.4",
"gene_symbol": "SIRT2",
"hgnc_id": 10886,
"effects": [
"stop_gained"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1135G>T",
"hgvs_p": "p.Glu379*"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}