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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-40692223-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=40692223&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 40692223,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000324464.8",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "NM_024876.4",
"protein_id": "NP_079152.3",
"transcript_support_level": null,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1750,
"cdna_end": null,
"cdna_length": 2443,
"mane_select": "ENST00000324464.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "ENST00000324464.8",
"protein_id": "ENSP00000315118.3",
"transcript_support_level": 1,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1750,
"cdna_end": null,
"cdna_length": 2443,
"mane_select": "NM_024876.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1324G>A",
"hgvs_p": "p.Glu442Lys",
"transcript": "ENST00000243583.10",
"protein_id": "ENSP00000243583.5",
"transcript_support_level": 1,
"aa_start": 442,
"aa_end": null,
"aa_length": 503,
"cds_start": 1324,
"cds_end": null,
"cds_length": 1512,
"cdna_start": 1348,
"cdna_end": null,
"cdna_length": 2041,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "ENST00000594720.6",
"protein_id": "ENSP00000470876.2",
"transcript_support_level": 5,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1485,
"cdna_end": null,
"cdna_length": 2194,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "ENST00000601967.6",
"protein_id": "ENSP00000470916.2",
"transcript_support_level": 3,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1492,
"cdna_end": null,
"cdna_length": 2201,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "ENST00000677018.1",
"protein_id": "ENSP00000503480.1",
"transcript_support_level": null,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1588,
"cdna_end": null,
"cdna_length": 2297,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "ENST00000678404.1",
"protein_id": "ENSP00000503944.1",
"transcript_support_level": null,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1742,
"cdna_end": null,
"cdna_length": 2451,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "ENST00000678419.1",
"protein_id": "ENSP00000504085.1",
"transcript_support_level": null,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1528,
"cdna_end": null,
"cdna_length": 2237,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "ENST00000678467.1",
"protein_id": "ENSP00000504072.1",
"transcript_support_level": null,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1564,
"cdna_end": null,
"cdna_length": 2273,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys",
"transcript": "ENST00000679130.1",
"protein_id": "ENSP00000504845.1",
"transcript_support_level": null,
"aa_start": 483,
"aa_end": null,
"aa_length": 544,
"cds_start": 1447,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1596,
"cdna_end": null,
"cdna_length": 2305,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1369G>A",
"hgvs_p": "p.Glu457Lys",
"transcript": "ENST00000594490.6",
"protein_id": "ENSP00000471310.2",
"transcript_support_level": 3,
"aa_start": 457,
"aa_end": null,
"aa_length": 518,
"cds_start": 1369,
"cds_end": null,
"cds_length": 1557,
"cdna_start": 1398,
"cdna_end": null,
"cdna_length": 2107,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1324G>A",
"hgvs_p": "p.Glu442Lys",
"transcript": "NM_001142555.3",
"protein_id": "NP_001136027.1",
"transcript_support_level": null,
"aa_start": 442,
"aa_end": null,
"aa_length": 503,
"cds_start": 1324,
"cds_end": null,
"cds_length": 1512,
"cdna_start": 1394,
"cdna_end": null,
"cdna_length": 2087,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1120G>A",
"hgvs_p": "p.Glu374Lys",
"transcript": "ENST00000677496.1",
"protein_id": "ENSP00000504773.1",
"transcript_support_level": null,
"aa_start": 374,
"aa_end": null,
"aa_length": 435,
"cds_start": 1120,
"cds_end": null,
"cds_length": 1308,
"cdna_start": 1337,
"cdna_end": null,
"cdna_length": 2046,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1120G>A",
"hgvs_p": "p.Glu374Lys",
"transcript": "ENST00000677517.1",
"protein_id": "ENSP00000503519.1",
"transcript_support_level": null,
"aa_start": 374,
"aa_end": null,
"aa_length": 435,
"cds_start": 1120,
"cds_end": null,
"cds_length": 1308,
"cdna_start": 1333,
"cdna_end": null,
"cdna_length": 2042,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "c.1003G>A",
"hgvs_p": "p.Glu335Lys",
"transcript": "ENST00000679012.1",
"protein_id": "ENSP00000504446.1",
"transcript_support_level": null,
"aa_start": 335,
"aa_end": null,
"aa_length": 396,
"cds_start": 1003,
"cds_end": null,
"cds_length": 1191,
"cdna_start": 1564,
"cdna_end": null,
"cdna_length": 2273,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "n.3270G>A",
"hgvs_p": null,
"transcript": "ENST00000593724.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3979,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "n.1739G>A",
"hgvs_p": null,
"transcript": "ENST00000596455.6",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2448,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "n.*872G>A",
"hgvs_p": null,
"transcript": "ENST00000676555.1",
"protein_id": "ENSP00000503387.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2795,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "n.*1189G>A",
"hgvs_p": null,
"transcript": "ENST00000676578.1",
"protein_id": "ENSP00000504076.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2297,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "n.1572G>A",
"hgvs_p": null,
"transcript": "ENST00000676960.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2281,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "n.1726G>A",
"hgvs_p": null,
"transcript": "ENST00000676962.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2435,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "n.3650G>A",
"hgvs_p": null,
"transcript": "ENST00000677039.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4343,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COQ8B",
"gene_hgnc_id": 19041,
"hgvs_c": "n.1889G>A",
"hgvs_p": null,
"transcript": "ENST00000677399.1",
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"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.4929385185241699,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.56,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.0933,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.06,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 6.148,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM1",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM1"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000324464.8",
"gene_symbol": "COQ8B",
"hgnc_id": 19041,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.1447G>A",
"hgvs_p": "p.Glu483Lys"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}