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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-41432404-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=41432404&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "DMAC2",
"hgnc_id": 25496,
"hgvs_c": "c.619C>T",
"hgvs_p": "p.Leu207Phe",
"inheritance_mode": "AR",
"pathogenic_score": 2,
"score": 2,
"transcript": "NM_001167867.2",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_score": 2,
"allele_count_reference_population": 13,
"alphamissense_prediction": null,
"alphamissense_score": 0.8892,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Uncertain_significance",
"bayesdelnoaf_score": -0.03,
"chr": "19",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Uncertain_significance",
"computational_score_selected": 0.6370412707328796,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 257,
"aa_ref": "L",
"aa_start": 201,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1700,
"cdna_start": 614,
"cds_end": null,
"cds_length": 774,
"cds_start": 601,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NM_018035.3",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.601C>T",
"hgvs_p": "p.Leu201Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000221943.14",
"protein_coding": true,
"protein_id": "NP_060505.2",
"strand": false,
"transcript": "NM_018035.3",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 257,
"aa_ref": "L",
"aa_start": 201,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 1700,
"cdna_start": 614,
"cds_end": null,
"cds_length": 774,
"cds_start": 601,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000221943.14",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.601C>T",
"hgvs_p": "p.Leu201Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_018035.3",
"protein_coding": true,
"protein_id": "ENSP00000221943.8",
"strand": false,
"transcript": "ENST00000221943.14",
"transcript_support_level": 2
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 158,
"aa_ref": "T",
"aa_start": 119,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1454,
"cdna_start": 368,
"cds_end": null,
"cds_length": 477,
"cds_start": 357,
"consequences": [
"synonymous_variant"
],
"exon_count": 4,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000438807.7",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.357C>T",
"hgvs_p": "p.Thr119Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000397413.3",
"strand": false,
"transcript": "ENST00000438807.7",
"transcript_support_level": 1
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 263,
"aa_ref": "L",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1733,
"cdna_start": 647,
"cds_end": null,
"cds_length": 792,
"cds_start": 619,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NM_001167867.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.619C>T",
"hgvs_p": "p.Leu207Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001161339.1",
"strand": false,
"transcript": "NM_001167867.2",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 263,
"aa_ref": "L",
"aa_start": 207,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1065,
"cdna_start": 649,
"cds_end": null,
"cds_length": 792,
"cds_start": 619,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000417807.7",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.619C>T",
"hgvs_p": "p.Leu207Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000403910.2",
"strand": false,
"transcript": "ENST00000417807.7",
"transcript_support_level": 2
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 236,
"aa_ref": "L",
"aa_start": 180,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1652,
"cdna_start": 566,
"cds_end": null,
"cds_length": 711,
"cds_start": 538,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "NM_001320840.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.538C>T",
"hgvs_p": "p.Leu180Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001307769.1",
"strand": false,
"transcript": "NM_001320840.2",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 230,
"aa_ref": "L",
"aa_start": 174,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1619,
"cdna_start": 533,
"cds_end": null,
"cds_length": 693,
"cds_start": 520,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "NM_001167871.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.520C>T",
"hgvs_p": "p.Leu174Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001161343.1",
"strand": false,
"transcript": "NM_001167871.2",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 230,
"aa_ref": "L",
"aa_start": 174,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1622,
"cdna_start": 557,
"cds_end": null,
"cds_length": 693,
"cds_start": 520,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000592922.6",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.520C>T",
"hgvs_p": "p.Leu174Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000467205.1",
"strand": false,
"transcript": "ENST00000592922.6",
"transcript_support_level": 2
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 170,
"aa_ref": "P",
"aa_start": 134,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1500,
"cdna_start": 414,
"cds_end": null,
"cds_length": 513,
"cds_start": 401,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "NM_001320838.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.401C>T",
"hgvs_p": "p.Pro134Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001307767.1",
"strand": false,
"transcript": "NM_001320838.2",
"transcript_support_level": null
},
{
"aa_alt": "F",
"aa_end": null,
"aa_length": 149,
"aa_ref": "L",
"aa_start": 118,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 582,
"cdna_start": 353,
"cds_end": null,
"cds_length": 450,
"cds_start": 352,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000594660.5",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.352C>T",
"hgvs_p": "p.Leu118Phe",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000470684.1",
"strand": false,
"transcript": "ENST00000594660.5",
"transcript_support_level": 3
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 191,
"aa_ref": "T",
"aa_start": 152,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1570,
"cdna_start": 484,
"cds_end": null,
"cds_length": 576,
"cds_start": 456,
"consequences": [
"synonymous_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "NM_001167868.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.456C>T",
"hgvs_p": "p.Thr152Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001161340.1",
"strand": false,
"transcript": "NM_001167868.2",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 191,
"aa_ref": "T",
"aa_start": 152,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1134,
"cdna_start": 486,
"cds_end": null,
"cds_length": 576,
"cds_start": 456,
"consequences": [
"synonymous_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000301183.15",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.456C>T",
"hgvs_p": "p.Thr152Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000301183.9",
"strand": false,
"transcript": "ENST00000301183.15",
"transcript_support_level": 2
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 185,
"aa_ref": "T",
"aa_start": 146,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1537,
"cdna_start": 451,
"cds_end": null,
"cds_length": 558,
"cds_start": 438,
"consequences": [
"synonymous_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "NM_001167869.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.438C>T",
"hgvs_p": "p.Thr146Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001161341.1",
"strand": false,
"transcript": "NM_001167869.2",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 185,
"aa_ref": "T",
"aa_start": 146,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 979,
"cdna_start": 447,
"cds_end": null,
"cds_length": 558,
"cds_start": 438,
"consequences": [
"synonymous_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000589970.5",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.438C>T",
"hgvs_p": "p.Thr146Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000466485.1",
"strand": false,
"transcript": "ENST00000589970.5",
"transcript_support_level": 2
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 164,
"aa_ref": "T",
"aa_start": 125,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1489,
"cdna_start": 403,
"cds_end": null,
"cds_length": 495,
"cds_start": 375,
"consequences": [
"synonymous_variant"
],
"exon_count": 4,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "NM_001320841.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.375C>T",
"hgvs_p": "p.Thr125Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001307770.1",
"strand": false,
"transcript": "NM_001320841.2",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 158,
"aa_ref": "T",
"aa_start": 119,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1456,
"cdna_start": 370,
"cds_end": null,
"cds_length": 477,
"cds_start": 357,
"consequences": [
"synonymous_variant"
],
"exon_count": 4,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "NM_001167870.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.357C>T",
"hgvs_p": "p.Thr119Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001161342.1",
"strand": false,
"transcript": "NM_001167870.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 178,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2515,
"cdna_start": null,
"cds_end": null,
"cds_length": 537,
"cds_start": null,
"consequences": [
"3_prime_UTR_variant"
],
"exon_count": 4,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "NM_001320839.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.*864C>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001307768.1",
"strand": false,
"transcript": "NM_001320839.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 172,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2482,
"cdna_start": null,
"cds_end": null,
"cds_length": 519,
"cds_start": null,
"consequences": [
"3_prime_UTR_variant"
],
"exon_count": 4,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "NM_001320844.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "c.*864C>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001307773.1",
"strand": false,
"transcript": "NM_001320844.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "retained_intron",
"canonical": false,
"cdna_end": null,
"cdna_length": 2317,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 3,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000589503.1",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "n.1232C>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000589503.1",
"transcript_support_level": 2
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "pseudogene",
"canonical": false,
"cdna_end": null,
"cdna_length": 1683,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 6,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NR_030765.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "n.597C>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "NR_030765.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "pseudogene",
"canonical": false,
"cdna_end": null,
"cdna_length": 1551,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 5,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "NR_135476.2",
"gene_hgnc_id": 25496,
"gene_symbol": "DMAC2",
"hgvs_c": "n.465C>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "NR_135476.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
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{
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}
]
}