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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-44476733-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=44476733&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 44476733,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_013256.7",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "NM_001278509.3",
"protein_id": "NP_001265438.2",
"transcript_support_level": null,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000592529.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278509.3"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "ENST00000592529.6",
"protein_id": "ENSP00000468021.1",
"transcript_support_level": 2,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001278509.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000592529.6"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1748G>A",
"hgvs_p": "p.Gly583Glu",
"transcript": "ENST00000221327.9",
"protein_id": "ENSP00000221327.3",
"transcript_support_level": 1,
"aa_start": 583,
"aa_end": null,
"aa_length": 692,
"cds_start": 1748,
"cds_end": null,
"cds_length": 2079,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000221327.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "n.*1555G>A",
"hgvs_p": null,
"transcript": "ENST00000590088.5",
"protein_id": "ENSP00000468523.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000590088.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "n.*1759G>A",
"hgvs_p": null,
"transcript": "ENST00000592095.5",
"protein_id": "ENSP00000466516.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000592095.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "n.*1555G>A",
"hgvs_p": null,
"transcript": "ENST00000590088.5",
"protein_id": "ENSP00000468523.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000590088.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "n.*1759G>A",
"hgvs_p": null,
"transcript": "ENST00000592095.5",
"protein_id": "ENSP00000466516.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000592095.5"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1748G>A",
"hgvs_p": "p.Gly583Glu",
"transcript": "NM_013256.7",
"protein_id": "NP_037388.3",
"transcript_support_level": null,
"aa_start": 583,
"aa_end": null,
"aa_length": 692,
"cds_start": 1748,
"cds_end": null,
"cds_length": 2079,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_013256.7"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1745G>A",
"hgvs_p": "p.Gly582Glu",
"transcript": "NM_001288759.4",
"protein_id": "NP_001275688.2",
"transcript_support_level": null,
"aa_start": 582,
"aa_end": null,
"aa_length": 691,
"cds_start": 1745,
"cds_end": null,
"cds_length": 2076,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001288759.4"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1673G>A",
"hgvs_p": "p.Gly558Glu",
"transcript": "NM_001278508.4",
"protein_id": "NP_001265437.2",
"transcript_support_level": null,
"aa_start": 558,
"aa_end": null,
"aa_length": 667,
"cds_start": 1673,
"cds_end": null,
"cds_length": 2004,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278508.4"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1673G>A",
"hgvs_p": "p.Gly558Glu",
"transcript": "ENST00000391956.8",
"protein_id": "ENSP00000375818.3",
"transcript_support_level": 2,
"aa_start": 558,
"aa_end": null,
"aa_length": 667,
"cds_start": 1673,
"cds_end": null,
"cds_length": 2004,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000391956.8"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "NM_001291633.2",
"protein_id": "NP_001278562.1",
"transcript_support_level": null,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001291633.2"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "ENST00000911258.1",
"protein_id": "ENSP00000581317.1",
"transcript_support_level": null,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911258.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "ENST00000911260.1",
"protein_id": "ENSP00000581319.1",
"transcript_support_level": null,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911260.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "ENST00000940757.1",
"protein_id": "ENSP00000610816.1",
"transcript_support_level": null,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000940757.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "ENST00000940758.1",
"protein_id": "ENSP00000610817.1",
"transcript_support_level": null,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000940758.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "ENST00000940759.1",
"protein_id": "ENSP00000610818.1",
"transcript_support_level": null,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000940759.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1667G>A",
"hgvs_p": "p.Gly556Glu",
"transcript": "ENST00000940760.1",
"protein_id": "ENSP00000610819.1",
"transcript_support_level": null,
"aa_start": 556,
"aa_end": null,
"aa_length": 665,
"cds_start": 1667,
"cds_end": null,
"cds_length": 1998,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000940760.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1655G>A",
"hgvs_p": "p.Gly552Glu",
"transcript": "ENST00000911257.1",
"protein_id": "ENSP00000581316.1",
"transcript_support_level": null,
"aa_start": 552,
"aa_end": null,
"aa_length": 661,
"cds_start": 1655,
"cds_end": null,
"cds_length": 1986,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911257.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1655G>A",
"hgvs_p": "p.Gly552Glu",
"transcript": "ENST00000911259.1",
"protein_id": "ENSP00000581318.1",
"transcript_support_level": null,
"aa_start": 552,
"aa_end": null,
"aa_length": 661,
"cds_start": 1655,
"cds_end": null,
"cds_length": 1986,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911259.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1592G>A",
"hgvs_p": "p.Gly531Glu",
"transcript": "ENST00000911254.1",
"protein_id": "ENSP00000581313.1",
"transcript_support_level": null,
"aa_start": 531,
"aa_end": null,
"aa_length": 640,
"cds_start": 1592,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911254.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1592G>A",
"hgvs_p": "p.Gly531Glu",
"transcript": "ENST00000911255.1",
"protein_id": "ENSP00000581314.1",
"transcript_support_level": null,
"aa_start": 531,
"aa_end": null,
"aa_length": 640,
"cds_start": 1592,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911255.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.1592G>A",
"hgvs_p": "p.Gly531Glu",
"transcript": "ENST00000911256.1",
"protein_id": "ENSP00000581315.1",
"transcript_support_level": null,
"aa_start": 531,
"aa_end": null,
"aa_length": 640,
"cds_start": 1592,
"cds_end": null,
"cds_length": 1923,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911256.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.719G>A",
"hgvs_p": "p.Gly240Glu",
"transcript": "NM_001288760.3",
"protein_id": "NP_001275689.1",
"transcript_support_level": null,
"aa_start": 240,
"aa_end": null,
"aa_length": 349,
"cds_start": 719,
"cds_end": null,
"cds_length": 1050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001288760.3"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.719G>A",
"hgvs_p": "p.Gly240Glu",
"transcript": "NM_001288761.3",
"protein_id": "NP_001275690.1",
"transcript_support_level": null,
"aa_start": 240,
"aa_end": null,
"aa_length": 349,
"cds_start": 719,
"cds_end": null,
"cds_length": 1050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001288761.3"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"hgvs_c": "c.719G>A",
"hgvs_p": "p.Gly240Glu",
"transcript": "NM_001288762.3",
"protein_id": "NP_001275691.1",
"transcript_support_level": null,
"aa_start": 240,
"aa_end": null,
"aa_length": 349,
"cds_start": 719,
"cds_end": null,
"cds_length": 1050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001288762.3"
}
],
"gene_symbol": "ZNF180",
"gene_hgnc_id": 12970,
"dbsnp": "rs1600063625",
"frequency_reference_population": 0.0000061957794,
"hom_count_reference_population": 1,
"allele_count_reference_population": 10,
"gnomad_exomes_af": 0.00000615656,
"gnomad_genomes_af": 0.00000657263,
"gnomad_exomes_ac": 9,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 1,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.5317301154136658,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.277,
"revel_prediction": "Benign",
"alphamissense_score": 0.6705,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.19,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.027,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_013256.7",
"gene_symbol": "ZNF180",
"hgnc_id": 12970,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1748G>A",
"hgvs_p": "p.Gly583Glu"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}