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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-48334028-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=48334028&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 48334028,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_018273.4",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.1145G>A",
"hgvs_p": "p.Gly382Asp",
"transcript": "NM_018273.4",
"protein_id": "NP_060743.2",
"transcript_support_level": null,
"aa_start": 382,
"aa_end": null,
"aa_length": 459,
"cds_start": 1145,
"cds_end": null,
"cds_length": 1380,
"cdna_start": 1165,
"cdna_end": null,
"cdna_length": 2263,
"mane_select": "ENST00000293261.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_018273.4"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.1145G>A",
"hgvs_p": "p.Gly382Asp",
"transcript": "ENST00000293261.8",
"protein_id": "ENSP00000293261.2",
"transcript_support_level": 1,
"aa_start": 382,
"aa_end": null,
"aa_length": 459,
"cds_start": 1145,
"cds_end": null,
"cds_length": 1380,
"cdna_start": 1165,
"cdna_end": null,
"cdna_length": 2263,
"mane_select": "NM_018273.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000293261.8"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.845G>A",
"hgvs_p": "p.Gly282Asp",
"transcript": "ENST00000377431.6",
"protein_id": "ENSP00000366649.1",
"transcript_support_level": 1,
"aa_start": 282,
"aa_end": null,
"aa_length": 359,
"cds_start": 845,
"cds_end": null,
"cds_length": 1080,
"cdna_start": 863,
"cdna_end": null,
"cdna_length": 1960,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000377431.6"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.1142G>A",
"hgvs_p": "p.Gly381Asp",
"transcript": "ENST00000948722.1",
"protein_id": "ENSP00000618781.1",
"transcript_support_level": null,
"aa_start": 381,
"aa_end": null,
"aa_length": 458,
"cds_start": 1142,
"cds_end": null,
"cds_length": 1377,
"cdna_start": 1161,
"cdna_end": null,
"cdna_length": 2259,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948722.1"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.1139G>A",
"hgvs_p": "p.Gly380Asp",
"transcript": "ENST00000893975.1",
"protein_id": "ENSP00000564034.1",
"transcript_support_level": null,
"aa_start": 380,
"aa_end": null,
"aa_length": 457,
"cds_start": 1139,
"cds_end": null,
"cds_length": 1374,
"cdna_start": 1157,
"cdna_end": null,
"cdna_length": 2245,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000893975.1"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.1040G>A",
"hgvs_p": "p.Gly347Asp",
"transcript": "NM_001303538.2",
"protein_id": "NP_001290467.1",
"transcript_support_level": null,
"aa_start": 347,
"aa_end": null,
"aa_length": 424,
"cds_start": 1040,
"cds_end": null,
"cds_length": 1275,
"cdna_start": 1060,
"cdna_end": null,
"cdna_length": 2158,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001303538.2"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.1040G>A",
"hgvs_p": "p.Gly347Asp",
"transcript": "ENST00000435956.7",
"protein_id": "ENSP00000397038.2",
"transcript_support_level": 2,
"aa_start": 347,
"aa_end": null,
"aa_length": 424,
"cds_start": 1040,
"cds_end": null,
"cds_length": 1275,
"cdna_start": 1179,
"cdna_end": null,
"cdna_length": 2272,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000435956.7"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.1037G>A",
"hgvs_p": "p.Gly346Asp",
"transcript": "ENST00000918864.1",
"protein_id": "ENSP00000588923.1",
"transcript_support_level": null,
"aa_start": 346,
"aa_end": null,
"aa_length": 423,
"cds_start": 1037,
"cds_end": null,
"cds_length": 1272,
"cdna_start": 1362,
"cdna_end": null,
"cdna_length": 2461,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000918864.1"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.950G>A",
"hgvs_p": "p.Gly317Asp",
"transcript": "NM_001303539.2",
"protein_id": "NP_001290468.1",
"transcript_support_level": null,
"aa_start": 317,
"aa_end": null,
"aa_length": 394,
"cds_start": 950,
"cds_end": null,
"cds_length": 1185,
"cdna_start": 970,
"cdna_end": null,
"cdna_length": 2068,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001303539.2"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.950G>A",
"hgvs_p": "p.Gly317Asp",
"transcript": "ENST00000893974.1",
"protein_id": "ENSP00000564033.1",
"transcript_support_level": null,
"aa_start": 317,
"aa_end": null,
"aa_length": 394,
"cds_start": 950,
"cds_end": null,
"cds_length": 1185,
"cdna_start": 970,
"cdna_end": null,
"cdna_length": 2068,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000893974.1"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.845G>A",
"hgvs_p": "p.Gly282Asp",
"transcript": "NM_001303540.2",
"protein_id": "NP_001290469.1",
"transcript_support_level": null,
"aa_start": 282,
"aa_end": null,
"aa_length": 359,
"cds_start": 845,
"cds_end": null,
"cds_length": 1080,
"cdna_start": 865,
"cdna_end": null,
"cdna_length": 1963,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001303540.2"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.734G>A",
"hgvs_p": "p.Gly245Asp",
"transcript": "ENST00000893977.1",
"protein_id": "ENSP00000564036.1",
"transcript_support_level": null,
"aa_start": 245,
"aa_end": null,
"aa_length": 322,
"cds_start": 734,
"cds_end": null,
"cds_length": 969,
"cdna_start": 742,
"cdna_end": null,
"cdna_length": 1838,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000893977.1"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.629G>A",
"hgvs_p": "p.Gly210Asp",
"transcript": "ENST00000893976.1",
"protein_id": "ENSP00000564035.1",
"transcript_support_level": null,
"aa_start": 210,
"aa_end": null,
"aa_length": 287,
"cds_start": 629,
"cds_end": null,
"cds_length": 864,
"cdna_start": 638,
"cdna_end": null,
"cdna_length": 1734,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000893976.1"
},
{
"aa_ref": "G",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "c.539G>A",
"hgvs_p": "p.Gly180Asp",
"transcript": "ENST00000948723.1",
"protein_id": "ENSP00000618782.1",
"transcript_support_level": null,
"aa_start": 180,
"aa_end": null,
"aa_length": 257,
"cds_start": 539,
"cds_end": null,
"cds_length": 774,
"cdna_start": 557,
"cdna_end": null,
"cdna_length": 1655,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948723.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "n.632G>A",
"hgvs_p": null,
"transcript": "ENST00000600816.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 810,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000600816.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"hgvs_c": "n.819G>A",
"hgvs_p": null,
"transcript": "NR_130317.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1917,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_130317.2"
}
],
"gene_symbol": "TMEM143",
"gene_hgnc_id": 25603,
"dbsnp": "rs1206948139",
"frequency_reference_population": 0.0000014209248,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000142092,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.10417911410331726,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.125,
"revel_prediction": "Benign",
"alphamissense_score": 0.0719,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.4,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.376,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_018273.4",
"gene_symbol": "TMEM143",
"hgnc_id": 25603,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1145G>A",
"hgvs_p": "p.Gly382Asp"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}