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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-48615417-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=48615417&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 48615417,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_000979.4",
"consequences": [
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.522C>A",
"hgvs_p": "p.Phe174Leu",
"transcript": "NM_000979.4",
"protein_id": "NP_000970.1",
"transcript_support_level": null,
"aa_start": 174,
"aa_end": null,
"aa_length": 188,
"cds_start": 522,
"cds_end": null,
"cds_length": 567,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000549920.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000979.4"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.522C>A",
"hgvs_p": "p.Phe174Leu",
"transcript": "ENST00000549920.6",
"protein_id": "ENSP00000447001.1",
"transcript_support_level": 1,
"aa_start": 174,
"aa_end": null,
"aa_length": 188,
"cds_start": 522,
"cds_end": null,
"cds_length": 567,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_000979.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000549920.6"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.525C>A",
"hgvs_p": "p.Phe175Leu",
"transcript": "ENST00000084795.9",
"protein_id": "ENSP00000084795.5",
"transcript_support_level": 1,
"aa_start": 175,
"aa_end": null,
"aa_length": 189,
"cds_start": 525,
"cds_end": null,
"cds_length": 570,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000084795.9"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.513C>A",
"hgvs_p": "p.Phe171Leu",
"transcript": "ENST00000919794.1",
"protein_id": "ENSP00000589853.1",
"transcript_support_level": null,
"aa_start": 171,
"aa_end": null,
"aa_length": 185,
"cds_start": 513,
"cds_end": null,
"cds_length": 558,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919794.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.507C>A",
"hgvs_p": "p.Phe169Leu",
"transcript": "ENST00000950806.1",
"protein_id": "ENSP00000620865.1",
"transcript_support_level": null,
"aa_start": 169,
"aa_end": null,
"aa_length": 183,
"cds_start": 507,
"cds_end": null,
"cds_length": 552,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000950806.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.456C>A",
"hgvs_p": "p.Phe152Leu",
"transcript": "ENST00000546623.5",
"protein_id": "ENSP00000446634.1",
"transcript_support_level": 5,
"aa_start": 152,
"aa_end": null,
"aa_length": 166,
"cds_start": 456,
"cds_end": null,
"cds_length": 501,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000546623.5"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.441C>A",
"hgvs_p": "p.Phe147Leu",
"transcript": "ENST00000919803.1",
"protein_id": "ENSP00000589862.1",
"transcript_support_level": null,
"aa_start": 147,
"aa_end": null,
"aa_length": 161,
"cds_start": 441,
"cds_end": null,
"cds_length": 486,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919803.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.435C>A",
"hgvs_p": "p.Phe145Leu",
"transcript": "NM_001270490.2",
"protein_id": "NP_001257419.1",
"transcript_support_level": null,
"aa_start": 145,
"aa_end": null,
"aa_length": 159,
"cds_start": 435,
"cds_end": null,
"cds_length": 480,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001270490.2"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.435C>A",
"hgvs_p": "p.Phe145Leu",
"transcript": "ENST00000552588.5",
"protein_id": "ENSP00000449204.1",
"transcript_support_level": 3,
"aa_start": 145,
"aa_end": null,
"aa_length": 159,
"cds_start": 435,
"cds_end": null,
"cds_length": 480,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000552588.5"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.423C>A",
"hgvs_p": "p.Phe141Leu",
"transcript": "ENST00000919793.1",
"protein_id": "ENSP00000589852.1",
"transcript_support_level": null,
"aa_start": 141,
"aa_end": null,
"aa_length": 155,
"cds_start": 423,
"cds_end": null,
"cds_length": 468,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919793.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.423C>A",
"hgvs_p": "p.Phe141Leu",
"transcript": "ENST00000919801.1",
"protein_id": "ENSP00000589860.1",
"transcript_support_level": null,
"aa_start": 141,
"aa_end": null,
"aa_length": 155,
"cds_start": 423,
"cds_end": null,
"cds_length": 468,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919801.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.414C>A",
"hgvs_p": "p.Phe138Leu",
"transcript": "ENST00000919799.1",
"protein_id": "ENSP00000589858.1",
"transcript_support_level": null,
"aa_start": 138,
"aa_end": null,
"aa_length": 152,
"cds_start": 414,
"cds_end": null,
"cds_length": 459,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919799.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.360C>A",
"hgvs_p": "p.Phe120Leu",
"transcript": "ENST00000919797.1",
"protein_id": "ENSP00000589856.1",
"transcript_support_level": null,
"aa_start": 120,
"aa_end": null,
"aa_length": 134,
"cds_start": 360,
"cds_end": null,
"cds_length": 405,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919797.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.357C>A",
"hgvs_p": "p.Phe119Leu",
"transcript": "ENST00000550645.5",
"protein_id": "ENSP00000448899.1",
"transcript_support_level": 5,
"aa_start": 119,
"aa_end": null,
"aa_length": 133,
"cds_start": 357,
"cds_end": null,
"cds_length": 402,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000550645.5"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.366C>A",
"hgvs_p": "p.Phe122Leu",
"transcript": "ENST00000550973.5",
"protein_id": "ENSP00000447894.1",
"transcript_support_level": 5,
"aa_start": 122,
"aa_end": null,
"aa_length": 129,
"cds_start": 366,
"cds_end": null,
"cds_length": 390,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000550973.5"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.315C>A",
"hgvs_p": "p.Phe105Leu",
"transcript": "ENST00000919798.1",
"protein_id": "ENSP00000589857.1",
"transcript_support_level": null,
"aa_start": 105,
"aa_end": null,
"aa_length": 119,
"cds_start": 315,
"cds_end": null,
"cds_length": 360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919798.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.282C>A",
"hgvs_p": "p.Phe94Leu",
"transcript": "ENST00000919802.1",
"protein_id": "ENSP00000589861.1",
"transcript_support_level": null,
"aa_start": 94,
"aa_end": null,
"aa_length": 108,
"cds_start": 282,
"cds_end": null,
"cds_length": 327,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919802.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.228C>A",
"hgvs_p": "p.Phe76Leu",
"transcript": "ENST00000919796.1",
"protein_id": "ENSP00000589855.1",
"transcript_support_level": null,
"aa_start": 76,
"aa_end": null,
"aa_length": 90,
"cds_start": 228,
"cds_end": null,
"cds_length": 273,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919796.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.465C>A",
"hgvs_p": "p.Phe155Leu",
"transcript": "ENST00000901609.1",
"protein_id": "ENSP00000571668.1",
"transcript_support_level": null,
"aa_start": 155,
"aa_end": null,
"aa_length": 169,
"cds_start": 465,
"cds_end": null,
"cds_length": 510,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901609.1"
},
{
"aa_ref": "F",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.93C>A",
"hgvs_p": "p.Phe31Leu",
"transcript": "ENST00000919795.1",
"protein_id": "ENSP00000589854.1",
"transcript_support_level": null,
"aa_start": 31,
"aa_end": null,
"aa_length": 45,
"cds_start": 93,
"cds_end": null,
"cds_length": 138,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919795.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.*456C>A",
"hgvs_p": null,
"transcript": "ENST00000549273.5",
"protein_id": "ENSP00000449610.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 164,
"cds_start": null,
"cds_end": null,
"cds_length": 495,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000549273.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "RPL18",
"gene_hgnc_id": 10310,
"hgvs_c": "c.353-32C>A",
"hgvs_p": null,
"transcript": "ENST00000919800.1",
"protein_id": "ENSP00000589859.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 121,
"cds_start": null,
"cds_end": null,
"cds_length": 366,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919800.1"
},
{
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"verdict": "Uncertain_significance",
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}
],
"message": null
}