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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-50276094-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=50276094&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 6,
"criteria": [
"BP4_Moderate",
"BS2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "MYH14",
"hgnc_id": 23212,
"hgvs_c": "c.3571G>T",
"hgvs_p": "p.Ala1191Ser",
"inheritance_mode": "AD",
"pathogenic_score": 0,
"score": -6,
"transcript": "NM_001145809.2",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Moderate,BS2",
"acmg_score": -6,
"allele_count_reference_population": 9,
"alphamissense_prediction": null,
"alphamissense_score": 0.0804,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.26,
"chr": "19",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.14185762405395508,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 2036,
"aa_ref": "A",
"aa_start": 1191,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6914,
"cdna_start": 3624,
"cds_end": null,
"cds_length": 6111,
"cds_start": 3571,
"consequences": [
"missense_variant"
],
"exon_count": 43,
"exon_rank": 28,
"exon_rank_end": null,
"feature": "NM_001145809.2",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3571G>T",
"hgvs_p": "p.Ala1191Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000642316.2",
"protein_coding": true,
"protein_id": "NP_001139281.1",
"strand": true,
"transcript": "NM_001145809.2",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 2036,
"aa_ref": "A",
"aa_start": 1191,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 6914,
"cdna_start": 3624,
"cds_end": null,
"cds_length": 6111,
"cds_start": 3571,
"consequences": [
"missense_variant"
],
"exon_count": 43,
"exon_rank": 28,
"exon_rank_end": null,
"feature": "ENST00000642316.2",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3571G>T",
"hgvs_p": "p.Ala1191Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001145809.2",
"protein_coding": true,
"protein_id": "ENSP00000493594.1",
"strand": true,
"transcript": "ENST00000642316.2",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 2003,
"aa_ref": "A",
"aa_start": 1158,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6815,
"cdna_start": 3525,
"cds_end": null,
"cds_length": 6012,
"cds_start": 3472,
"consequences": [
"missense_variant"
],
"exon_count": 42,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "NM_001077186.2",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3472G>T",
"hgvs_p": "p.Ala1158Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001070654.1",
"strand": true,
"transcript": "NM_001077186.2",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 2003,
"aa_ref": "A",
"aa_start": 1158,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6815,
"cdna_start": 3525,
"cds_end": null,
"cds_length": 6012,
"cds_start": 3472,
"consequences": [
"missense_variant"
],
"exon_count": 42,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000425460.6",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3472G>T",
"hgvs_p": "p.Ala1158Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000407879.1",
"strand": true,
"transcript": "ENST00000425460.6",
"transcript_support_level": 5
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 2003,
"aa_ref": "A",
"aa_start": 1158,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6137,
"cdna_start": 3597,
"cds_end": null,
"cds_length": 6012,
"cds_start": 3472,
"consequences": [
"missense_variant"
],
"exon_count": 42,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000598205.5",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3472G>T",
"hgvs_p": "p.Ala1158Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000472543.1",
"strand": true,
"transcript": "ENST00000598205.5",
"transcript_support_level": 5
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 2003,
"aa_ref": "A",
"aa_start": 1158,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7397,
"cdna_start": 4102,
"cds_end": null,
"cds_length": 6012,
"cds_start": 3472,
"consequences": [
"missense_variant"
],
"exon_count": 42,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000910081.1",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3472G>T",
"hgvs_p": "p.Ala1158Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000580140.1",
"strand": true,
"transcript": "ENST00000910081.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 2003,
"aa_ref": "A",
"aa_start": 1158,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6851,
"cdna_start": 3563,
"cds_end": null,
"cds_length": 6012,
"cds_start": 3472,
"consequences": [
"missense_variant"
],
"exon_count": 42,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000910082.1",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3472G>T",
"hgvs_p": "p.Ala1158Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000580141.1",
"strand": true,
"transcript": "ENST00000910082.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 2003,
"aa_ref": "A",
"aa_start": 1158,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6880,
"cdna_start": 3593,
"cds_end": null,
"cds_length": 6012,
"cds_start": 3472,
"consequences": [
"missense_variant"
],
"exon_count": 42,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000943713.1",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3472G>T",
"hgvs_p": "p.Ala1158Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000613772.1",
"strand": true,
"transcript": "ENST00000943713.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 1995,
"aa_ref": "A",
"aa_start": 1150,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6791,
"cdna_start": 3501,
"cds_end": null,
"cds_length": 5988,
"cds_start": 3448,
"consequences": [
"missense_variant"
],
"exon_count": 41,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "NM_024729.4",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3448G>T",
"hgvs_p": "p.Ala1150Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_079005.3",
"strand": true,
"transcript": "NM_024729.4",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 1995,
"aa_ref": "A",
"aa_start": 1150,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6787,
"cdna_start": 3495,
"cds_end": null,
"cds_length": 5988,
"cds_start": 3448,
"consequences": [
"missense_variant"
],
"exon_count": 41,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000376970.6",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3448G>T",
"hgvs_p": "p.Ala1150Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000366169.3",
"strand": true,
"transcript": "ENST00000376970.6",
"transcript_support_level": 5
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 1995,
"aa_ref": "A",
"aa_start": 1150,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5988,
"cdna_start": 3448,
"cds_end": null,
"cds_length": 5988,
"cds_start": 3448,
"consequences": [
"missense_variant"
],
"exon_count": 40,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000596571.5",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3448G>T",
"hgvs_p": "p.Ala1150Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000472819.1",
"strand": true,
"transcript": "ENST00000596571.5",
"transcript_support_level": 5
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 1971,
"aa_ref": "A",
"aa_start": 1126,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6793,
"cdna_start": 3500,
"cds_end": null,
"cds_length": 5916,
"cds_start": 3376,
"consequences": [
"missense_variant"
],
"exon_count": 41,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000943710.1",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3376G>T",
"hgvs_p": "p.Ala1126Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000613769.1",
"strand": true,
"transcript": "ENST00000943710.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 1971,
"aa_ref": "A",
"aa_start": 1126,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6706,
"cdna_start": 3417,
"cds_end": null,
"cds_length": 5916,
"cds_start": 3376,
"consequences": [
"missense_variant"
],
"exon_count": 41,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000943712.1",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3376G>T",
"hgvs_p": "p.Ala1126Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000613771.1",
"strand": true,
"transcript": "ENST00000943712.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 1963,
"aa_ref": "A",
"aa_start": 1118,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6707,
"cdna_start": 3417,
"cds_end": null,
"cds_length": 5892,
"cds_start": 3352,
"consequences": [
"missense_variant"
],
"exon_count": 40,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000943711.1",
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"hgvs_c": "c.3352G>T",
"hgvs_p": "p.Ala1118Ser",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000613770.1",
"strand": true,
"transcript": "ENST00000943711.1",
"transcript_support_level": null
}
],
"custom_annotations": null,
"dbscsnv_ada_prediction": null,
"dbscsnv_ada_score": null,
"dbsnp": "rs776570317",
"effect": "missense_variant",
"frequency_reference_population": 0.0000061759315,
"gene_hgnc_id": 23212,
"gene_symbol": "MYH14",
"gnomad_exomes_ac": 9,
"gnomad_exomes_af": 0.00000617593,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_ac": null,
"gnomad_genomes_af": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_heteroplasmic": null,
"gnomad_mito_homoplasmic": null,
"hom_count_reference_population": 0,
"mitotip_prediction": null,
"mitotip_score": null,
"pathogenicity_classification_combined": "Uncertain significance",
"phenotype_combined": "not specified",
"phylop100way_prediction": "Benign",
"phylop100way_score": 1.268,
"pos": 50276094,
"ref": "G",
"revel_prediction": "Benign",
"revel_score": 0.23,
"splice_prediction_selected": "Benign",
"splice_score_selected": 0.009999999776482582,
"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
"spliceai_max_score": 0.01,
"transcript": "NM_001145809.2"
}
]
}