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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-53164576-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=53164576&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 53164576,
"ref": "A",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_001353458.2",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "NM_024733.5",
"protein_id": "NP_079009.3",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000396424.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_024733.5"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "ENST00000396424.5",
"protein_id": "ENSP00000379702.2",
"transcript_support_level": 2,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_024733.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000396424.5"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1998T>A",
"hgvs_p": "p.Arg666Arg",
"transcript": "NM_001353458.2",
"protein_id": "NP_001340387.1",
"transcript_support_level": null,
"aa_start": 666,
"aa_end": null,
"aa_length": 706,
"cds_start": 1998,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001353458.2"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "NM_001353459.2",
"protein_id": "NP_001340388.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001353459.2"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "ENST00000650736.1",
"protein_id": "ENSP00000498600.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000650736.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "ENST00000868912.1",
"protein_id": "ENSP00000538971.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000868912.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "ENST00000868913.1",
"protein_id": "ENSP00000538972.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000868913.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "ENST00000958707.1",
"protein_id": "ENSP00000628766.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000958707.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "ENST00000958708.1",
"protein_id": "ENSP00000628767.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000958708.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1908T>A",
"hgvs_p": "p.Arg636Arg",
"transcript": "NM_001353457.2",
"protein_id": "NP_001340386.1",
"transcript_support_level": null,
"aa_start": 636,
"aa_end": null,
"aa_length": 676,
"cds_start": 1908,
"cds_end": null,
"cds_length": 2031,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001353457.2"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1719T>A",
"hgvs_p": "p.Arg573Arg",
"transcript": "ENST00000600412.1",
"protein_id": "ENSP00000469154.1",
"transcript_support_level": 5,
"aa_start": 573,
"aa_end": null,
"aa_length": 613,
"cds_start": 1719,
"cds_end": null,
"cds_length": 1842,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000600412.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1965T>A",
"hgvs_p": "p.Arg655Arg",
"transcript": "XM_011527325.4",
"protein_id": "XP_011525627.1",
"transcript_support_level": null,
"aa_start": 655,
"aa_end": null,
"aa_length": 695,
"cds_start": 1965,
"cds_end": null,
"cds_length": 2088,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011527325.4"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1914T>A",
"hgvs_p": "p.Arg638Arg",
"transcript": "XM_047439446.1",
"protein_id": "XP_047295402.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 678,
"cds_start": 1914,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047439446.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1908T>A",
"hgvs_p": "p.Arg636Arg",
"transcript": "XM_047439447.1",
"protein_id": "XP_047295403.1",
"transcript_support_level": null,
"aa_start": 636,
"aa_end": null,
"aa_length": 676,
"cds_start": 1908,
"cds_end": null,
"cds_length": 2031,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047439447.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1893T>A",
"hgvs_p": "p.Arg631Arg",
"transcript": "XM_047439448.1",
"protein_id": "XP_047295404.1",
"transcript_support_level": null,
"aa_start": 631,
"aa_end": null,
"aa_length": 671,
"cds_start": 1893,
"cds_end": null,
"cds_length": 2016,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047439448.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1842T>A",
"hgvs_p": "p.Arg614Arg",
"transcript": "XM_047439449.1",
"protein_id": "XP_047295405.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 654,
"cds_start": 1842,
"cds_end": null,
"cds_length": 1965,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047439449.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1719T>A",
"hgvs_p": "p.Arg573Arg",
"transcript": "XM_047439450.1",
"protein_id": "XP_047295406.1",
"transcript_support_level": null,
"aa_start": 573,
"aa_end": null,
"aa_length": 613,
"cds_start": 1719,
"cds_end": null,
"cds_length": 1842,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047439450.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"hgvs_c": "c.1719T>A",
"hgvs_p": "p.Arg573Arg",
"transcript": "XM_047439451.1",
"protein_id": "XP_047295407.1",
"transcript_support_level": null,
"aa_start": 573,
"aa_end": null,
"aa_length": 613,
"cds_start": 1719,
"cds_end": null,
"cds_length": 1842,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047439451.1"
}
],
"gene_symbol": "ZNF665",
"gene_hgnc_id": 25885,
"dbsnp": "rs759168785",
"frequency_reference_population": 0.000092003575,
"hom_count_reference_population": 0,
"allele_count_reference_population": 14,
"gnomad_exomes_af": 0.000218961,
"gnomad_genomes_af": 0.0000920036,
"gnomad_exomes_ac": 320,
"gnomad_genomes_ac": 14,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9800000190734863,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.98,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -6.923,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -7,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Moderate,BP7",
"acmg_by_gene": [
{
"score": -7,
"benign_score": 7,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Moderate",
"BP7"
],
"verdict": "Benign",
"transcript": "NM_001353458.2",
"gene_symbol": "ZNF665",
"hgnc_id": 25885,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1998T>A",
"hgvs_p": "p.Arg666Arg"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}