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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-55092500-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=55092500&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 55092500,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_017607.4",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1997G>A",
"hgvs_p": "p.Arg666Gln",
"transcript": "NM_017607.4",
"protein_id": "NP_060077.1",
"transcript_support_level": null,
"aa_start": 666,
"aa_end": null,
"aa_length": 782,
"cds_start": 1997,
"cds_end": null,
"cds_length": 2349,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000263433.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_017607.4"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1997G>A",
"hgvs_p": "p.Arg666Gln",
"transcript": "ENST00000263433.8",
"protein_id": "ENSP00000263433.1",
"transcript_support_level": 1,
"aa_start": 666,
"aa_end": null,
"aa_length": 782,
"cds_start": 1997,
"cds_end": null,
"cds_length": 2349,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_017607.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000263433.8"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1859G>A",
"hgvs_p": "p.Arg620Gln",
"transcript": "ENST00000592993.1",
"protein_id": "ENSP00000465957.1",
"transcript_support_level": 1,
"aa_start": 620,
"aa_end": null,
"aa_length": 736,
"cds_start": 1859,
"cds_end": null,
"cds_length": 2211,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000592993.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1994G>A",
"hgvs_p": "p.Arg665Gln",
"transcript": "ENST00000854894.1",
"protein_id": "ENSP00000524953.1",
"transcript_support_level": null,
"aa_start": 665,
"aa_end": null,
"aa_length": 781,
"cds_start": 1994,
"cds_end": null,
"cds_length": 2346,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000854894.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1994G>A",
"hgvs_p": "p.Arg665Gln",
"transcript": "ENST00000854895.1",
"protein_id": "ENSP00000524954.1",
"transcript_support_level": null,
"aa_start": 665,
"aa_end": null,
"aa_length": 781,
"cds_start": 1994,
"cds_end": null,
"cds_length": 2346,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000854895.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1991G>A",
"hgvs_p": "p.Arg664Gln",
"transcript": "NM_001271618.2",
"protein_id": "NP_001258547.1",
"transcript_support_level": null,
"aa_start": 664,
"aa_end": null,
"aa_length": 780,
"cds_start": 1991,
"cds_end": null,
"cds_length": 2343,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001271618.2"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1991G>A",
"hgvs_p": "p.Arg664Gln",
"transcript": "ENST00000954568.1",
"protein_id": "ENSP00000624627.1",
"transcript_support_level": null,
"aa_start": 664,
"aa_end": null,
"aa_length": 780,
"cds_start": 1991,
"cds_end": null,
"cds_length": 2343,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954568.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1967G>A",
"hgvs_p": "p.Arg656Gln",
"transcript": "ENST00000954574.1",
"protein_id": "ENSP00000624633.1",
"transcript_support_level": null,
"aa_start": 656,
"aa_end": null,
"aa_length": 772,
"cds_start": 1967,
"cds_end": null,
"cds_length": 2319,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954574.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1964G>A",
"hgvs_p": "p.Arg655Gln",
"transcript": "ENST00000954565.1",
"protein_id": "ENSP00000624624.1",
"transcript_support_level": null,
"aa_start": 655,
"aa_end": null,
"aa_length": 771,
"cds_start": 1964,
"cds_end": null,
"cds_length": 2316,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954565.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1964G>A",
"hgvs_p": "p.Arg655Gln",
"transcript": "ENST00000954571.1",
"protein_id": "ENSP00000624630.1",
"transcript_support_level": null,
"aa_start": 655,
"aa_end": null,
"aa_length": 771,
"cds_start": 1964,
"cds_end": null,
"cds_length": 2316,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954571.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1961G>A",
"hgvs_p": "p.Arg654Gln",
"transcript": "ENST00000954566.1",
"protein_id": "ENSP00000624625.1",
"transcript_support_level": null,
"aa_start": 654,
"aa_end": null,
"aa_length": 770,
"cds_start": 1961,
"cds_end": null,
"cds_length": 2313,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954566.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1943G>A",
"hgvs_p": "p.Arg648Gln",
"transcript": "ENST00000954570.1",
"protein_id": "ENSP00000624629.1",
"transcript_support_level": null,
"aa_start": 648,
"aa_end": null,
"aa_length": 764,
"cds_start": 1943,
"cds_end": null,
"cds_length": 2295,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954570.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1937G>A",
"hgvs_p": "p.Arg646Gln",
"transcript": "ENST00000954567.1",
"protein_id": "ENSP00000624626.1",
"transcript_support_level": null,
"aa_start": 646,
"aa_end": null,
"aa_length": 762,
"cds_start": 1937,
"cds_end": null,
"cds_length": 2289,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954567.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1772G>A",
"hgvs_p": "p.Arg591Gln",
"transcript": "ENST00000435544.6",
"protein_id": "ENSP00000387833.2",
"transcript_support_level": 2,
"aa_start": 591,
"aa_end": null,
"aa_length": 707,
"cds_start": 1772,
"cds_end": null,
"cds_length": 2124,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000435544.6"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1703G>A",
"hgvs_p": "p.Arg568Gln",
"transcript": "ENST00000954573.1",
"protein_id": "ENSP00000624632.1",
"transcript_support_level": null,
"aa_start": 568,
"aa_end": null,
"aa_length": 684,
"cds_start": 1703,
"cds_end": null,
"cds_length": 2055,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954573.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1700G>A",
"hgvs_p": "p.Arg567Gln",
"transcript": "ENST00000954575.1",
"protein_id": "ENSP00000624634.1",
"transcript_support_level": null,
"aa_start": 567,
"aa_end": null,
"aa_length": 683,
"cds_start": 1700,
"cds_end": null,
"cds_length": 2052,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954575.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1697G>A",
"hgvs_p": "p.Arg566Gln",
"transcript": "ENST00000954569.1",
"protein_id": "ENSP00000624628.1",
"transcript_support_level": null,
"aa_start": 566,
"aa_end": null,
"aa_length": 682,
"cds_start": 1697,
"cds_end": null,
"cds_length": 2049,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954569.1"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.350G>A",
"hgvs_p": "p.Arg117Gln",
"transcript": "ENST00000591938.5",
"protein_id": "ENSP00000468148.1",
"transcript_support_level": 5,
"aa_start": 117,
"aa_end": null,
"aa_length": 233,
"cds_start": 350,
"cds_end": null,
"cds_length": 702,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000591938.5"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1994G>A",
"hgvs_p": "p.Arg665Gln",
"transcript": "XM_005259013.5",
"protein_id": "XP_005259070.1",
"transcript_support_level": null,
"aa_start": 665,
"aa_end": null,
"aa_length": 781,
"cds_start": 1994,
"cds_end": null,
"cds_length": 2346,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005259013.5"
},
{
"aa_ref": "R",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1994G>A",
"hgvs_p": "p.Arg665Gln",
"transcript": "XM_011527045.3",
"protein_id": "XP_011525347.1",
"transcript_support_level": null,
"aa_start": 665,
"aa_end": null,
"aa_length": 781,
"cds_start": 1994,
"cds_end": null,
"cds_length": 2346,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011527045.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "c.1909-174G>A",
"hgvs_p": null,
"transcript": "ENST00000954572.1",
"protein_id": "ENSP00000624631.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 733,
"cds_start": null,
"cds_end": null,
"cds_length": 2202,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954572.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "n.99G>A",
"hgvs_p": null,
"transcript": "ENST00000590268.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000590268.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"hgvs_c": "n.2046+122G>A",
"hgvs_p": null,
"transcript": "XR_007066879.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_007066879.1"
}
],
"gene_symbol": "PPP1R12C",
"gene_hgnc_id": 14947,
"dbsnp": "rs771894836",
"frequency_reference_population": 0.0000049725822,
"hom_count_reference_population": 0,
"allele_count_reference_population": 8,
"gnomad_exomes_af": 0.00000343255,
"gnomad_genomes_af": 0.0000197135,
"gnomad_exomes_ac": 5,
"gnomad_genomes_ac": 3,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.06395676732063293,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.019999999552965164,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.018,
"revel_prediction": "Benign",
"alphamissense_score": 0.0711,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.63,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.111,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.02,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_017607.4",
"gene_symbol": "PPP1R12C",
"hgnc_id": 14947,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.1997G>A",
"hgvs_p": "p.Arg666Gln"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}