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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 19-6218013-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=6218013&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "19",
"pos": 6218013,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_005934.4",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1139G>T",
"hgvs_p": "p.Ser380Ile",
"transcript": "NM_005934.4",
"protein_id": "NP_005925.2",
"transcript_support_level": null,
"aa_start": 380,
"aa_end": null,
"aa_length": 559,
"cds_start": 1139,
"cds_end": null,
"cds_length": 1680,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000252674.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005934.4"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1139G>T",
"hgvs_p": "p.Ser380Ile",
"transcript": "ENST00000252674.9",
"protein_id": "ENSP00000252674.6",
"transcript_support_level": 1,
"aa_start": 380,
"aa_end": null,
"aa_length": 559,
"cds_start": 1139,
"cds_end": null,
"cds_length": 1680,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_005934.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000252674.9"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1013G>T",
"hgvs_p": "p.Ser338Ile",
"transcript": "ENST00000867663.1",
"protein_id": "ENSP00000537722.1",
"transcript_support_level": null,
"aa_start": 338,
"aa_end": null,
"aa_length": 517,
"cds_start": 1013,
"cds_end": null,
"cds_length": 1554,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867663.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1010G>T",
"hgvs_p": "p.Ser337Ile",
"transcript": "ENST00000943587.1",
"protein_id": "ENSP00000613646.1",
"transcript_support_level": null,
"aa_start": 337,
"aa_end": null,
"aa_length": 516,
"cds_start": 1010,
"cds_end": null,
"cds_length": 1551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000943587.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.731G>T",
"hgvs_p": "p.Ser244Ile",
"transcript": "ENST00000943586.1",
"protein_id": "ENSP00000613645.1",
"transcript_support_level": null,
"aa_start": 244,
"aa_end": null,
"aa_length": 423,
"cds_start": 731,
"cds_end": null,
"cds_length": 1272,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000943586.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1262G>T",
"hgvs_p": "p.Ser421Ile",
"transcript": "XM_011528021.1",
"protein_id": "XP_011526323.1",
"transcript_support_level": null,
"aa_start": 421,
"aa_end": null,
"aa_length": 600,
"cds_start": 1262,
"cds_end": null,
"cds_length": 1803,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011528021.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1145G>T",
"hgvs_p": "p.Ser382Ile",
"transcript": "XM_011528022.2",
"protein_id": "XP_011526324.1",
"transcript_support_level": null,
"aa_start": 382,
"aa_end": null,
"aa_length": 561,
"cds_start": 1145,
"cds_end": null,
"cds_length": 1686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011528022.2"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1136G>T",
"hgvs_p": "p.Ser379Ile",
"transcript": "XM_011528023.1",
"protein_id": "XP_011526325.1",
"transcript_support_level": null,
"aa_start": 379,
"aa_end": null,
"aa_length": 558,
"cds_start": 1136,
"cds_end": null,
"cds_length": 1677,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011528023.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1043G>T",
"hgvs_p": "p.Ser348Ile",
"transcript": "XM_017026819.3",
"protein_id": "XP_016882308.1",
"transcript_support_level": null,
"aa_start": 348,
"aa_end": null,
"aa_length": 527,
"cds_start": 1043,
"cds_end": null,
"cds_length": 1584,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017026819.3"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"hgvs_c": "c.1013G>T",
"hgvs_p": "p.Ser338Ile",
"transcript": "XM_047438846.1",
"protein_id": "XP_047294802.1",
"transcript_support_level": null,
"aa_start": 338,
"aa_end": null,
"aa_length": 517,
"cds_start": 1013,
"cds_end": null,
"cds_length": 1554,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047438846.1"
}
],
"gene_symbol": "MLLT1",
"gene_hgnc_id": 7134,
"dbsnp": "rs138601995",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": 0,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 0,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.41898787021636963,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.07000000029802322,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.42,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.3936,
"alphamissense_prediction": "Uncertain_significance",
"bayesdelnoaf_score": -0.21,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 4.956,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0.07,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 1,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4",
"acmg_by_gene": [
{
"score": 1,
"benign_score": 1,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4"
],
"verdict": "Uncertain_significance",
"transcript": "NM_005934.4",
"gene_symbol": "MLLT1",
"hgnc_id": 7134,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.1139G>T",
"hgvs_p": "p.Ser380Ile"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}