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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 19-9413360-C-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=19&pos=9413360&ref=C&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "19",
      "pos": 9413360,
      "ref": "C",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_001370374.1",
      "consequences": [
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "NM_001370374.1",
          "protein_id": "NP_001357303.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000592904.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370374.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000592904.7",
          "protein_id": "ENSP00000466714.2",
          "transcript_support_level": 1,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001370374.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000592904.7"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1565G>T",
          "hgvs_p": "p.Cys522Phe",
          "transcript": "ENST00000588933.5",
          "protein_id": "ENSP00000467151.1",
          "transcript_support_level": 1,
          "aa_start": 522,
          "aa_end": null,
          "aa_length": 549,
          "cds_start": 1565,
          "cds_end": null,
          "cds_length": 1650,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000588933.5"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1565G>T",
          "hgvs_p": "p.Cys522Phe",
          "transcript": "ENST00000590306.5",
          "protein_id": "ENSP00000467315.1",
          "transcript_support_level": 1,
          "aa_start": 522,
          "aa_end": null,
          "aa_length": 549,
          "cds_start": 1565,
          "cds_end": null,
          "cds_length": 1650,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000590306.5"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "NM_001370375.1",
          "protein_id": "NP_001357304.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370375.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "NM_001370384.1",
          "protein_id": "NP_001357313.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370384.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "NM_001370385.1",
          "protein_id": "NP_001357314.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370385.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859744.1",
          "protein_id": "ENSP00000529803.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859744.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859745.1",
          "protein_id": "ENSP00000529804.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859745.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859746.1",
          "protein_id": "ENSP00000529805.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859746.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859747.1",
          "protein_id": "ENSP00000529806.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859747.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859748.1",
          "protein_id": "ENSP00000529807.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859748.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859749.1",
          "protein_id": "ENSP00000529808.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859749.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859750.1",
          "protein_id": "ENSP00000529809.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
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          "cds_length": 1851,
          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000859750.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859751.1",
          "protein_id": "ENSP00000529810.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
          "cds_length": 1851,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859751.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859752.1",
          "protein_id": "ENSP00000529811.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 616,
          "cds_start": 1766,
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          "biotype": "protein_coding",
          "feature": "ENST00000859752.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859753.1",
          "protein_id": "ENSP00000529812.1",
          "transcript_support_level": null,
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          "cds_start": 1766,
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          "biotype": "protein_coding",
          "feature": "ENST00000859753.1"
        },
        {
          "aa_ref": "C",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
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          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859754.1",
          "protein_id": "ENSP00000529813.1",
          "transcript_support_level": null,
          "aa_start": 589,
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          "cds_start": 1766,
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          "biotype": "protein_coding",
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        {
          "aa_ref": "C",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859755.1",
          "protein_id": "ENSP00000529814.1",
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          "cds_start": 1766,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859755.1"
        },
        {
          "aa_ref": "C",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZNF266",
          "gene_hgnc_id": 13059,
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe",
          "transcript": "ENST00000859756.1",
          "protein_id": "ENSP00000529815.1",
          "transcript_support_level": null,
          "aa_start": 589,
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          "aa_length": 616,
          "cds_start": 1766,
          "cds_end": null,
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      "gene_symbol": "ZNF266",
      "gene_hgnc_id": 13059,
      "dbsnp": "rs1329394394",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.7476693391799927,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.294,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.8306,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.08,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 2.832,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 3,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3",
      "acmg_by_gene": [
        {
          "score": 3,
          "benign_score": 0,
          "pathogenic_score": 3,
          "criteria": [
            "PM2",
            "PP3"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001370374.1",
          "gene_symbol": "ZNF266",
          "hgnc_id": 13059,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1766G>T",
          "hgvs_p": "p.Cys589Phe"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}