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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-111031678-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=111031678&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 111031678,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_001437600.1",
      "consequences": [
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1333C>T",
          "hgvs_p": "p.His445Tyr",
          "transcript": "NM_001142807.4",
          "protein_id": "NP_001136279.1",
          "transcript_support_level": null,
          "aa_start": 445,
          "aa_end": null,
          "aa_length": 580,
          "cds_start": 1333,
          "cds_end": null,
          "cds_length": 1743,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000439055.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001142807.4"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1333C>T",
          "hgvs_p": "p.His445Tyr",
          "transcript": "ENST00000439055.6",
          "protein_id": "ENSP00000407761.1",
          "transcript_support_level": 2,
          "aa_start": 445,
          "aa_end": null,
          "aa_length": 580,
          "cds_start": 1333,
          "cds_end": null,
          "cds_length": 1743,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001142807.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000439055.6"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.847C>T",
          "hgvs_p": "p.His283Tyr",
          "transcript": "ENST00000417074.5",
          "protein_id": "ENSP00000387832.1",
          "transcript_support_level": 1,
          "aa_start": 283,
          "aa_end": null,
          "aa_length": 355,
          "cds_start": 847,
          "cds_end": null,
          "cds_length": 1068,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000417074.5"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1465C>T",
          "hgvs_p": "p.His489Tyr",
          "transcript": "ENST00000957119.1",
          "protein_id": "ENSP00000627178.1",
          "transcript_support_level": null,
          "aa_start": 489,
          "aa_end": null,
          "aa_length": 624,
          "cds_start": 1465,
          "cds_end": null,
          "cds_length": 1875,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957119.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1333C>T",
          "hgvs_p": "p.His445Tyr",
          "transcript": "ENST00000957116.1",
          "protein_id": "ENSP00000627175.1",
          "transcript_support_level": null,
          "aa_start": 445,
          "aa_end": null,
          "aa_length": 619,
          "cds_start": 1333,
          "cds_end": null,
          "cds_length": 1860,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957116.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1423C>T",
          "hgvs_p": "p.His475Tyr",
          "transcript": "NM_001437600.1",
          "protein_id": "NP_001424529.1",
          "transcript_support_level": null,
          "aa_start": 475,
          "aa_end": null,
          "aa_length": 610,
          "cds_start": 1423,
          "cds_end": null,
          "cds_length": 1833,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001437600.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1423C>T",
          "hgvs_p": "p.His475Tyr",
          "transcript": "ENST00000676595.2",
          "protein_id": "ENSP00000503683.1",
          "transcript_support_level": null,
          "aa_start": 475,
          "aa_end": null,
          "aa_length": 610,
          "cds_start": 1423,
          "cds_end": null,
          "cds_length": 1833,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000676595.2"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1405C>T",
          "hgvs_p": "p.His469Tyr",
          "transcript": "ENST00000957122.1",
          "protein_id": "ENSP00000627181.1",
          "transcript_support_level": null,
          "aa_start": 469,
          "aa_end": null,
          "aa_length": 604,
          "cds_start": 1405,
          "cds_end": null,
          "cds_length": 1815,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957122.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1333C>T",
          "hgvs_p": "p.His445Tyr",
          "transcript": "ENST00000930161.1",
          "protein_id": "ENSP00000600220.1",
          "transcript_support_level": null,
          "aa_start": 445,
          "aa_end": null,
          "aa_length": 580,
          "cds_start": 1333,
          "cds_end": null,
          "cds_length": 1743,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000930161.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1330C>T",
          "hgvs_p": "p.His444Tyr",
          "transcript": "ENST00000930163.1",
          "protein_id": "ENSP00000600222.1",
          "transcript_support_level": null,
          "aa_start": 444,
          "aa_end": null,
          "aa_length": 579,
          "cds_start": 1330,
          "cds_end": null,
          "cds_length": 1740,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000930163.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1249C>T",
          "hgvs_p": "p.His417Tyr",
          "transcript": "ENST00000930159.1",
          "protein_id": "ENSP00000600218.1",
          "transcript_support_level": null,
          "aa_start": 417,
          "aa_end": null,
          "aa_length": 552,
          "cds_start": 1249,
          "cds_end": null,
          "cds_length": 1659,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000930159.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1423C>T",
          "hgvs_p": "p.His475Tyr",
          "transcript": "NM_001371254.1",
          "protein_id": "NP_001358183.1",
          "transcript_support_level": null,
          "aa_start": 475,
          "aa_end": null,
          "aa_length": 547,
          "cds_start": 1423,
          "cds_end": null,
          "cds_length": 1644,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001371254.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1423C>T",
          "hgvs_p": "p.His475Tyr",
          "transcript": "ENST00000389811.8",
          "protein_id": "ENSP00000374461.4",
          "transcript_support_level": 5,
          "aa_start": 475,
          "aa_end": null,
          "aa_length": 547,
          "cds_start": 1423,
          "cds_end": null,
          "cds_length": 1644,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000389811.8"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1216C>T",
          "hgvs_p": "p.His406Tyr",
          "transcript": "ENST00000903107.1",
          "protein_id": "ENSP00000573166.1",
          "transcript_support_level": null,
          "aa_start": 406,
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          "aa_length": 541,
          "cds_start": 1216,
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          "cdna_start": null,
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        {
          "aa_ref": "H",
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1216C>T",
          "hgvs_p": "p.His406Tyr",
          "transcript": "ENST00000957115.1",
          "protein_id": "ENSP00000627174.1",
          "transcript_support_level": null,
          "aa_start": 406,
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          "aa_length": 541,
          "cds_start": 1216,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000957115.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1132C>T",
          "hgvs_p": "p.His378Tyr",
          "transcript": "ENST00000957121.1",
          "protein_id": "ENSP00000627180.1",
          "transcript_support_level": null,
          "aa_start": 378,
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          "aa_length": 513,
          "cds_start": 1132,
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          "biotype": "protein_coding",
          "feature": "ENST00000957121.1"
        },
        {
          "aa_ref": "H",
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1111C>T",
          "hgvs_p": "p.His371Tyr",
          "transcript": "ENST00000930157.1",
          "protein_id": "ENSP00000600216.1",
          "transcript_support_level": null,
          "aa_start": 371,
          "aa_end": null,
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        {
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          "exon_count": 16,
          "intron_rank": null,
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          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.1111C>T",
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          "protein_id": "ENSP00000627173.1",
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          "cds_start": 1111,
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        },
        {
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          ],
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          "gene_symbol": "ACOXL",
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          "hgvs_c": "c.1027C>T",
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          "transcript": "ENST00000957120.1",
          "protein_id": "ENSP00000627179.1",
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000957120.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACOXL",
          "gene_hgnc_id": 25621,
          "hgvs_c": "c.910C>T",
          "hgvs_p": "p.His304Tyr",
          "transcript": "ENST00000957118.1",
          "protein_id": "ENSP00000627177.1",
          "transcript_support_level": null,
          "aa_start": 304,
          "aa_end": null,
          "aa_length": 439,
          "cds_start": 910,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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      "dbsnp": "rs1158724274",
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      "allele_count_reference_population": 7,
      "gnomad_exomes_af": 0.00000410429,
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      "gnomad_exomes_ac": 6,
      "gnomad_genomes_ac": 1,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.49894291162490845,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.272,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.3636,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.14,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 2.471,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
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      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_by_gene": [
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001437600.1",
          "gene_symbol": "ACOXL",
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          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1423C>T",
          "hgvs_p": "p.His475Tyr"
        },
        {
          "score": 2,
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          "criteria": [
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          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000645030.2",
          "gene_symbol": "MIR4435-2HG",
          "hgnc_id": 35163,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.599+5098G>A",
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}