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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-11787112-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=11787112&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 11787112,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001261428.3",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "NM_001349206.2",
"protein_id": "NP_001336135.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1637,
"cdna_end": null,
"cdna_length": 5448,
"mane_select": "ENST00000674199.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001349206.2"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000674199.1",
"protein_id": "ENSP00000501331.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1637,
"cdna_end": null,
"cdna_length": 5448,
"mane_select": "NM_001349206.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000674199.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1480G>C",
"hgvs_p": "p.Val494Leu",
"transcript": "ENST00000256720.6",
"protein_id": "ENSP00000256720.2",
"transcript_support_level": 1,
"aa_start": 494,
"aa_end": null,
"aa_length": 890,
"cds_start": 1480,
"cds_end": null,
"cds_length": 2673,
"cdna_start": 1573,
"cdna_end": null,
"cdna_length": 5384,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000256720.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "n.1073G>C",
"hgvs_p": null,
"transcript": "ENST00000404113.6",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4005,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000404113.6"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000852442.1",
"protein_id": "ENSP00000522501.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 991,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2976,
"cdna_start": 1639,
"cdna_end": null,
"cdna_length": 4233,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852442.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000961826.1",
"protein_id": "ENSP00000631885.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 986,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2961,
"cdna_start": 1684,
"cdna_end": null,
"cdna_length": 5671,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000961826.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1735G>C",
"hgvs_p": "p.Val579Leu",
"transcript": "NM_001261428.3",
"protein_id": "NP_001248357.1",
"transcript_support_level": null,
"aa_start": 579,
"aa_end": null,
"aa_length": 975,
"cds_start": 1735,
"cds_end": null,
"cds_length": 2928,
"cdna_start": 1839,
"cdna_end": null,
"cdna_length": 5650,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001261428.3"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1735G>C",
"hgvs_p": "p.Val579Leu",
"transcript": "ENST00000449576.6",
"protein_id": "ENSP00000397908.2",
"transcript_support_level": 2,
"aa_start": 579,
"aa_end": null,
"aa_length": 975,
"cds_start": 1735,
"cds_end": null,
"cds_length": 2928,
"cdna_start": 1788,
"cdna_end": null,
"cdna_length": 3077,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000449576.6"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1678G>C",
"hgvs_p": "p.Val560Leu",
"transcript": "NM_001349207.2",
"protein_id": "NP_001336136.1",
"transcript_support_level": null,
"aa_start": 560,
"aa_end": null,
"aa_length": 956,
"cds_start": 1678,
"cds_end": null,
"cds_length": 2871,
"cdna_start": 1782,
"cdna_end": null,
"cdna_length": 5593,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001349207.2"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1627G>C",
"hgvs_p": "p.Val543Leu",
"transcript": "NM_001349208.2",
"protein_id": "NP_001336137.1",
"transcript_support_level": null,
"aa_start": 543,
"aa_end": null,
"aa_length": 939,
"cds_start": 1627,
"cds_end": null,
"cds_length": 2820,
"cdna_start": 1731,
"cdna_end": null,
"cdna_length": 5542,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001349208.2"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1606G>C",
"hgvs_p": "p.Val536Leu",
"transcript": "ENST00000396097.5",
"protein_id": "ENSP00000379404.2",
"transcript_support_level": 5,
"aa_start": 536,
"aa_end": null,
"aa_length": 932,
"cds_start": 1606,
"cds_end": null,
"cds_length": 2799,
"cdna_start": 1883,
"cdna_end": null,
"cdna_length": 5690,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000396097.5"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "NM_001349204.2",
"protein_id": "NP_001336133.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1755,
"cdna_end": null,
"cdna_length": 5566,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001349204.2"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "NM_001349205.2",
"protein_id": "NP_001336134.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 2069,
"cdna_end": null,
"cdna_length": 5880,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001349205.2"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000852429.1",
"protein_id": "ENSP00000522488.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1785,
"cdna_end": null,
"cdna_length": 5582,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852429.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000852439.1",
"protein_id": "ENSP00000522498.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1649,
"cdna_end": null,
"cdna_length": 4588,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852439.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000852440.1",
"protein_id": "ENSP00000522499.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1913,
"cdna_end": null,
"cdna_length": 4852,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852440.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000961824.1",
"protein_id": "ENSP00000631883.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1653,
"cdna_end": null,
"cdna_length": 4541,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000961824.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000961825.1",
"protein_id": "ENSP00000631884.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1681,
"cdna_end": null,
"cdna_length": 4594,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000961825.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000961827.1",
"protein_id": "ENSP00000631886.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1756,
"cdna_end": null,
"cdna_length": 5563,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000961827.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000961831.1",
"protein_id": "ENSP00000631890.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 2081,
"cdna_end": null,
"cdna_length": 5020,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000961831.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1588G>C",
"hgvs_p": "p.Val530Leu",
"transcript": "ENST00000961832.1",
"protein_id": "ENSP00000631891.1",
"transcript_support_level": null,
"aa_start": 530,
"aa_end": null,
"aa_length": 926,
"cds_start": 1588,
"cds_end": null,
"cds_length": 2781,
"cdna_start": 1964,
"cdna_end": null,
"cdna_length": 4879,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000961832.1"
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LPIN1",
"gene_hgnc_id": 13345,
"hgvs_c": "c.1585G>C",
"hgvs_p": "p.Val529Leu",
"transcript": "NM_001349202.2",
"protein_id": "NP_001336131.1",
"transcript_support_level": null,
"aa_start": 529,
"aa_end": null,
"aa_length": 925,
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{
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"clinvar_disease": "",
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"clinvar_review_status": "",
"clinvar_submissions_summary": "",
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"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}