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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-127426208-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=127426208&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM1",
"PM5",
"PP2",
"PP5_Very_Strong"
],
"effects": [
"missense_variant"
],
"gene_symbol": "PROC",
"hgnc_id": 9451,
"hgvs_c": "c.845G>A",
"hgvs_p": "p.Arg282Gln",
"inheritance_mode": "SD,AD,AR",
"pathogenic_score": 13,
"score": 13,
"transcript": "NM_001375607.1",
"verdict": "Pathogenic"
},
{
"benign_score": 0,
"criteria": [
"PP5_Very_Strong"
],
"effects": [
"non_coding_transcript_exon_variant"
],
"gene_symbol": "LOC105373608",
"hgnc_id": null,
"hgvs_c": "n.3097C>T",
"hgvs_p": null,
"inheritance_mode": "",
"pathogenic_score": 8,
"score": 8,
"transcript": "XR_007087228.1",
"verdict": "Likely_pathogenic"
}
],
"acmg_classification": "Pathogenic",
"acmg_criteria": "PM1,PM5,PP2,PP5_Very_Strong",
"acmg_score": 13,
"allele_count_reference_population": 98,
"alphamissense_prediction": null,
"alphamissense_score": 0.0726,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Uncertain_significance",
"bayesdelnoaf_score": -0.06,
"chr": "2",
"clinvar_classification": "Pathogenic/Likely pathogenic",
"clinvar_disease": " autosomal dominant, autosomal recessive,Reduced protein C activity,Thrombophilia due to protein C deficiency,not provided",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:6 LP:1",
"computational_prediction_selected": "Uncertain_significance",
"computational_score_selected": 0.534868061542511,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 461,
"aa_ref": "R",
"aa_start": 220,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1769,
"cdna_start": 746,
"cds_end": null,
"cds_length": 1386,
"cds_start": 659,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "NM_000312.4",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.659G>A",
"hgvs_p": "p.Arg220Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000234071.8",
"protein_coding": true,
"protein_id": "NP_000303.1",
"strand": true,
"transcript": "NM_000312.4",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 461,
"aa_ref": "R",
"aa_start": 220,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 1769,
"cdna_start": 746,
"cds_end": null,
"cds_length": 1386,
"cds_start": 659,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000234071.8",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.659G>A",
"hgvs_p": "p.Arg220Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_000312.4",
"protein_coding": true,
"protein_id": "ENSP00000234071.4",
"strand": true,
"transcript": "ENST00000234071.8",
"transcript_support_level": 1
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 523,
"aa_ref": "R",
"aa_start": 282,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1888,
"cdna_start": 865,
"cds_end": null,
"cds_length": 1572,
"cds_start": 845,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NM_001375607.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.845G>A",
"hgvs_p": "p.Arg282Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001362536.1",
"strand": true,
"transcript": "NM_001375607.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 522,
"aa_ref": "R",
"aa_start": 281,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1885,
"cdna_start": 862,
"cds_end": null,
"cds_length": 1569,
"cds_start": 842,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "NM_001375602.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.842G>A",
"hgvs_p": "p.Arg281Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001362531.1",
"strand": true,
"transcript": "NM_001375602.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 519,
"aa_ref": "R",
"aa_start": 278,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1721,
"cdna_start": 927,
"cds_end": null,
"cds_length": 1560,
"cds_start": 833,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883860.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.833G>A",
"hgvs_p": "p.Arg278Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553919.1",
"strand": true,
"transcript": "ENST00000883860.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 519,
"aa_ref": "R",
"aa_start": 278,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2118,
"cdna_start": 1122,
"cds_end": null,
"cds_length": 1560,
"cds_start": 833,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000883897.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.833G>A",
"hgvs_p": "p.Arg278Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553956.1",
"strand": true,
"transcript": "ENST00000883897.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 517,
"aa_ref": "R",
"aa_start": 276,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1870,
"cdna_start": 847,
"cds_end": null,
"cds_length": 1554,
"cds_start": 827,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NM_001375606.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.827G>A",
"hgvs_p": "p.Arg276Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001362535.1",
"strand": true,
"transcript": "NM_001375606.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 516,
"aa_ref": "R",
"aa_start": 275,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1867,
"cdna_start": 844,
"cds_end": null,
"cds_length": 1551,
"cds_start": 824,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NM_001375603.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.824G>A",
"hgvs_p": "p.Arg275Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001362532.1",
"strand": true,
"transcript": "NM_001375603.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 512,
"aa_ref": "R",
"aa_start": 271,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1853,
"cdna_start": 1058,
"cds_end": null,
"cds_length": 1539,
"cds_start": 812,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000883902.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.812G>A",
"hgvs_p": "p.Arg271Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553961.1",
"strand": true,
"transcript": "ENST00000883902.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1871,
"cdna_start": 848,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NM_001375605.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001362534.1",
"strand": true,
"transcript": "NM_001375605.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1586,
"cdna_start": 822,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000409048.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000386679.1",
"strand": true,
"transcript": "ENST00000409048.1",
"transcript_support_level": 5
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1984,
"cdna_start": 955,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883843.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553902.1",
"strand": true,
"transcript": "ENST00000883843.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1980,
"cdna_start": 951,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883844.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553903.1",
"strand": true,
"transcript": "ENST00000883844.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1855,
"cdna_start": 859,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883854.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553913.1",
"strand": true,
"transcript": "ENST00000883854.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2151,
"cdna_start": 1125,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883858.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553917.1",
"strand": true,
"transcript": "ENST00000883858.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1661,
"cdna_start": 867,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883861.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553920.1",
"strand": true,
"transcript": "ENST00000883861.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1865,
"cdna_start": 1070,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883880.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553939.1",
"strand": true,
"transcript": "ENST00000883880.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1984,
"cdna_start": 958,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883881.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553940.1",
"strand": true,
"transcript": "ENST00000883881.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1943,
"cdna_start": 947,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883888.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553947.1",
"strand": true,
"transcript": "ENST00000883888.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1793,
"cdna_start": 998,
"cds_end": null,
"cds_length": 1488,
"cds_start": 761,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883893.1",
"gene_hgnc_id": 9451,
"gene_symbol": "PROC",
"hgvs_c": "c.761G>A",
"hgvs_p": "p.Arg254Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553952.1",
"strand": true,
"transcript": "ENST00000883893.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 254,
"biotype": "protein_coding",
"canonical": false,
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},
{
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"downstream_gene_variant"
],
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],
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"dbsnp": "rs121918153",
"effect": "missense_variant",
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"pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
"phenotype_combined": "Thrombophilia due to protein C deficiency, autosomal dominant|Reduced protein C activity|Thrombophilia due to protein C deficiency, autosomal dominant;Thrombophilia due to protein C deficiency, autosomal recessive|not provided",
"phylop100way_prediction": "Benign",
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"ref": "G",
"revel_prediction": "Uncertain_significance",
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"splice_prediction_selected": "Benign",
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"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
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}
]
}