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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-144388331-GCTCTT-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=144388331&ref=GCTCTT&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 144388331,
      "ref": "GCTCTT",
      "alt": "G",
      "effect": "3_prime_UTR_variant",
      "transcript": "NM_014795.4",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "NM_014795.4",
          "protein_id": "NP_055610.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 9265,
          "mane_select": "ENST00000627532.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_014795.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000627532.3",
          "protein_id": "ENSP00000487174.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 9265,
          "mane_select": "NM_014795.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000627532.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000636471.1",
          "protein_id": "ENSP00000490317.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1239,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3720,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 9583,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000636471.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000409487.7",
          "protein_id": "ENSP00000386854.2",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5361,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000409487.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000886176.1",
          "protein_id": "ENSP00000556235.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5192,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886176.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000886177.1",
          "protein_id": "ENSP00000556236.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5367,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886177.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000886179.1",
          "protein_id": "ENSP00000556238.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5330,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886179.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000965901.1",
          "protein_id": "ENSP00000635960.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5196,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000965901.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000965902.1",
          "protein_id": "ENSP00000635961.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": null,
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          "cds_length": 3645,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5203,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000965902.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "NM_001171653.2",
          "protein_id": "NP_001165124.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1190,
          "cds_start": null,
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          "cds_length": 3573,
          "cdna_start": null,
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          "cdna_length": 9193,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001171653.2"
        },
        {
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000886178.1",
          "protein_id": "ENSP00000556237.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 1190,
          "cds_start": null,
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          "cds_length": 3573,
          "cdna_start": null,
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          "cdna_length": 5239,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
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        {
          "aa_ref": null,
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000636413.1",
          "protein_id": "ENSP00000490508.1",
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          "aa_start": null,
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          "cds_start": null,
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          "cdna_start": null,
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          "mane_select": null,
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        {
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 9,
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          "exon_count": 9,
          "intron_rank": null,
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          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000637045.1",
          "protein_id": "ENSP00000490141.1",
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          "cds_start": null,
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        },
        {
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 9,
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          "exon_count": 9,
          "intron_rank": null,
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000637304.1",
          "protein_id": "ENSP00000490872.1",
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "c.*1115_*1119delAAGAG",
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          "transcript": "ENST00000638007.1",
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        },
        {
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          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "c.*1115_*1119delAAGAG",
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          "transcript": "ENST00000440875.6",
          "protein_id": "ENSP00000475553.3",
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        {
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          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000638128.1",
          "protein_id": "ENSP00000490934.1",
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        {
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          "intron_rank": null,
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "c.*539_*543delAAGAG",
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          "protein_id": "ENSP00000394777.2",
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        },
        {
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          ],
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          "exon_count": 2,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.151+8076_151+8080delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000639389.1",
          "protein_id": "ENSP00000492572.1",
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          "aa_start": null,
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "n.4729_4733delAAGAG",
          "hgvs_p": null,
          "transcript": "ENST00000636179.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
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          "cdna_start": null,
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          "cdna_length": 8984,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000636179.1"
        },
        {
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        {
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "n.4860_4864delAAGAG",
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        {
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          "gene_symbol": "ZEB2",
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        {
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        {
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "c.*1039_*1043delAAGAG",
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          "transcript": "ENST00000636026.2",
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          "biotype": "protein_coding",
          "feature": "ENST00000636026.2"
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      ],
      "gene_symbol": "ZEB2",
      "gene_hgnc_id": 14881,
      "dbsnp": "rs534438826",
      "frequency_reference_population": 0.0002368203,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 36,
      "gnomad_exomes_af": 0,
      "gnomad_genomes_af": 0.00023682,
      "gnomad_exomes_ac": 0,
      "gnomad_genomes_ac": 36,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": null,
      "splice_prediction_selected": null,
      "splice_source_selected": null,
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
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      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 7.558,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": null,
      "spliceai_max_prediction": null,
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
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      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -3,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PP3,BS2",
      "acmg_by_gene": [
        {
          "score": -3,
          "benign_score": 4,
          "pathogenic_score": 1,
          "criteria": [
            "PP3",
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_014795.4",
          "gene_symbol": "ZEB2",
          "hgnc_id": 14881,
          "effects": [
            "3_prime_UTR_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.*1115_*1119delAAGAG",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Mowat-Wilson syndrome",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "Mowat-Wilson syndrome",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.