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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-144398733-C-CA (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=144398733&ref=C&alt=CA&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 144398733,
      "ref": "C",
      "alt": "CA",
      "effect": "frameshift_variant",
      "transcript": "ENST00000627532.3",
      "consequences": [
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2453dupT",
          "hgvs_p": "p.Leu818fs",
          "transcript": "NM_014795.4",
          "protein_id": "NP_055610.1",
          "transcript_support_level": null,
          "aa_start": 818,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": 2453,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": 2703,
          "cdna_end": null,
          "cdna_length": 9265,
          "mane_select": "ENST00000627532.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2453dupT",
          "hgvs_p": "p.Leu818fs",
          "transcript": "ENST00000627532.3",
          "protein_id": "ENSP00000487174.1",
          "transcript_support_level": 1,
          "aa_start": 818,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": 2453,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": 2703,
          "cdna_end": null,
          "cdna_length": 9265,
          "mane_select": "NM_014795.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2453dupT",
          "hgvs_p": "p.Leu818fs",
          "transcript": "ENST00000558170.6",
          "protein_id": "ENSP00000454157.1",
          "transcript_support_level": 1,
          "aa_start": 818,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": 2453,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": 2654,
          "cdna_end": null,
          "cdna_length": 4012,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2450dupT",
          "hgvs_p": "p.Leu817fs",
          "transcript": "ENST00000303660.8",
          "protein_id": "ENSP00000302501.4",
          "transcript_support_level": 1,
          "aa_start": 817,
          "aa_end": null,
          "aa_length": 1213,
          "cds_start": 2450,
          "cds_end": null,
          "cds_length": 3642,
          "cdna_start": 2587,
          "cdna_end": null,
          "cdna_length": 3913,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2528dupT",
          "hgvs_p": "p.Leu843fs",
          "transcript": "ENST00000636471.1",
          "protein_id": "ENSP00000490317.1",
          "transcript_support_level": 5,
          "aa_start": 843,
          "aa_end": null,
          "aa_length": 1239,
          "cds_start": 2528,
          "cds_end": null,
          "cds_length": 3720,
          "cdna_start": 3021,
          "cdna_end": null,
          "cdna_length": 9583,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2453dupT",
          "hgvs_p": "p.Leu818fs",
          "transcript": "ENST00000409487.7",
          "protein_id": "ENSP00000386854.2",
          "transcript_support_level": 5,
          "aa_start": 818,
          "aa_end": null,
          "aa_length": 1214,
          "cds_start": 2453,
          "cds_end": null,
          "cds_length": 3645,
          "cdna_start": 2736,
          "cdna_end": null,
          "cdna_length": 5361,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2453dupT",
          "hgvs_p": "p.Leu818fs",
          "transcript": "ENST00000636026.2",
          "protein_id": "ENSP00000490776.1",
          "transcript_support_level": 5,
          "aa_start": 818,
          "aa_end": null,
          "aa_length": 1202,
          "cds_start": 2453,
          "cds_end": null,
          "cds_length": 3609,
          "cdna_start": 2982,
          "cdna_end": null,
          "cdna_length": 5172,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2381dupT",
          "hgvs_p": "p.Leu794fs",
          "transcript": "NM_001171653.2",
          "protein_id": "NP_001165124.1",
          "transcript_support_level": null,
          "aa_start": 794,
          "aa_end": null,
          "aa_length": 1190,
          "cds_start": 2381,
          "cds_end": null,
          "cds_length": 3573,
          "cdna_start": 2631,
          "cdna_end": null,
          "cdna_length": 9193,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2381dupT",
          "hgvs_p": "p.Leu794fs",
          "transcript": "ENST00000539609.7",
          "protein_id": "ENSP00000443792.2",
          "transcript_support_level": 2,
          "aa_start": 794,
          "aa_end": null,
          "aa_length": 1190,
          "cds_start": 2381,
          "cds_end": null,
          "cds_length": 3573,
          "cdna_start": 2631,
          "cdna_end": null,
          "cdna_length": 4061,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2117dupT",
          "hgvs_p": "p.Leu706fs",
          "transcript": "ENST00000636413.1",
          "protein_id": "ENSP00000490508.1",
          "transcript_support_level": 5,
          "aa_start": 706,
          "aa_end": null,
          "aa_length": 1102,
          "cds_start": 2117,
          "cds_end": null,
          "cds_length": 3309,
          "cdna_start": 2422,
          "cdna_end": null,
          "cdna_length": 8984,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2117dupT",
          "hgvs_p": "p.Leu706fs",
          "transcript": "ENST00000637045.1",
          "protein_id": "ENSP00000490141.1",
          "transcript_support_level": 5,
          "aa_start": 706,
          "aa_end": null,
          "aa_length": 1102,
          "cds_start": 2117,
          "cds_end": null,
          "cds_length": 3309,
          "cdna_start": 2529,
          "cdna_end": null,
          "cdna_length": 9091,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2117dupT",
          "hgvs_p": "p.Leu706fs",
          "transcript": "ENST00000637304.1",
          "protein_id": "ENSP00000490872.1",
          "transcript_support_level": 5,
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          "cds_start": 2117,
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          "cdna_start": 2596,
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          "mane_select": null,
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        },
        {
          "aa_ref": "L",
          "aa_alt": "F?",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
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          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2117dupT",
          "hgvs_p": "p.Leu706fs",
          "transcript": "ENST00000638007.1",
          "protein_id": "ENSP00000490723.1",
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          "cds_start": 2117,
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          "cdna_start": 2578,
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        {
          "aa_ref": "L",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
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          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.2117dupT",
          "hgvs_p": "p.Leu706fs",
          "transcript": "ENST00000638087.1",
          "protein_id": "ENSP00000490673.1",
          "transcript_support_level": 5,
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          "aa_length": 1102,
          "cds_start": 2117,
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          "cdna_start": 2777,
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        },
        {
          "aa_ref": "L",
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.1676dupT",
          "hgvs_p": "p.Leu559fs",
          "transcript": "ENST00000440875.6",
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "L",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.1676dupT",
          "hgvs_p": "p.Leu559fs",
          "transcript": "ENST00000638128.1",
          "protein_id": "ENSP00000490934.1",
          "transcript_support_level": 5,
          "aa_start": 559,
          "aa_end": null,
          "aa_length": 955,
          "cds_start": 1676,
          "cds_end": null,
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          "cdna_start": 2370,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "n.2422dupT",
          "hgvs_p": null,
          "transcript": "ENST00000636179.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
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          "cdna_start": null,
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          "cdna_length": 8984,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "n.*2170dupT",
          "hgvs_p": null,
          "transcript": "ENST00000636732.2",
          "protein_id": "ENSP00000490175.1",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "n.2553dupT",
          "hgvs_p": null,
          "transcript": "ENST00000636820.1",
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          "transcript_support_level": 5,
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          "mane_select": null,
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          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "n.3001dupT",
          "hgvs_p": null,
          "transcript": "ENST00000675145.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3014,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
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        },
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          "protein_coding": true,
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          "consequences": [
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          "exon_count": 4,
          "intron_rank": null,
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "c.-17dupT",
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          "transcript": "ENST00000675069.1",
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": 8,
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          "exon_count": 10,
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          "gene_symbol": "ZEB2",
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          "hgvs_c": "n.*2170dupT",
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          "transcript": "ENST00000636732.2",
          "protein_id": "ENSP00000490175.1",
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": 8,
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          "gene_symbol": "ZEB2",
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          "transcript": "ENST00000689298.1",
          "protein_id": "ENSP00000508434.1",
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        },
        {
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          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "ZEB2",
          "gene_hgnc_id": 14881,
          "hgvs_c": "c.655+2465dupT",
          "hgvs_p": null,
          "transcript": "ENST00000419938.5",
          "protein_id": "ENSP00000394777.2",
          "transcript_support_level": 2,
          "aa_start": null,
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          "aa_length": 220,
          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 1755,
          "mane_select": null,
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          "feature": null
        }
      ],
      "gene_symbol": "ZEB2",
      "gene_hgnc_id": 14881,
      "dbsnp": "rs587776606",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 9.246,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 11,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5",
      "acmg_by_gene": [
        {
          "score": 11,
          "benign_score": 0,
          "pathogenic_score": 11,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5"
          ],
          "verdict": "Pathogenic",
          "transcript": "ENST00000627532.3",
          "gene_symbol": "ZEB2",
          "hgnc_id": 14881,
          "effects": [
            "frameshift_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.2453dupT",
          "hgvs_p": "p.Leu818fs"
        }
      ],
      "clinvar_disease": "Mowat-Wilson syndrome",
      "clinvar_classification": "Pathogenic",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "Mowat-Wilson syndrome",
      "pathogenicity_classification_combined": "Pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}