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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-148021676-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=148021676&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 148021676,
"ref": "G",
"alt": "A",
"effect": "5_prime_UTR_variant",
"transcript": "NM_001378120.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-933G>A",
"hgvs_p": null,
"transcript": "NM_001378120.1",
"protein_id": "NP_001365049.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1727,
"cds_start": -4,
"cds_end": null,
"cds_length": 5184,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10732,
"mane_select": "ENST00000642680.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-933G>A",
"hgvs_p": null,
"transcript": "ENST00000642680.2",
"protein_id": "ENSP00000493871.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1727,
"cds_start": -4,
"cds_end": null,
"cds_length": 5184,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10732,
"mane_select": "NM_001378120.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-933G>A",
"hgvs_p": null,
"transcript": "ENST00000407073.5",
"protein_id": "ENSP00000386049.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1494,
"cds_start": -4,
"cds_end": null,
"cds_length": 4485,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9512,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.84G>A",
"hgvs_p": null,
"transcript": "ENST00000469438.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 252,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.222G>A",
"hgvs_p": null,
"transcript": "ENST00000470063.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 324,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.240G>A",
"hgvs_p": null,
"transcript": "ENST00000473478.5",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 484,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.439G>A",
"hgvs_p": null,
"transcript": "ENST00000478190.3",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4131,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.226G>A",
"hgvs_p": null,
"transcript": "ENST00000635796.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1371,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.260G>A",
"hgvs_p": null,
"transcript": "ENST00000637308.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1072,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.47G>A",
"hgvs_p": null,
"transcript": "ENST00000637445.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 958,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.226G>A",
"hgvs_p": null,
"transcript": "ENST00000637997.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
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"aa_length": null,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
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"hgvs_c": "n.73G>A",
"hgvs_p": null,
"transcript": "ENST00000638090.1",
"protein_id": null,
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"aa_start": null,
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},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "n.284G>A",
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"transcript": "ENST00000638130.1",
"protein_id": null,
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"aa_start": null,
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"cds_start": -4,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
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"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-992G>A",
"hgvs_p": null,
"transcript": "NM_001438854.1",
"protein_id": "NP_001425783.1",
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"aa_start": null,
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},
{
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"5_prime_UTR_variant"
],
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"intron_rank": null,
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"gene_symbol": "MBD5",
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"transcript": "NM_001438856.1",
"protein_id": "NP_001425785.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
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"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-1020G>A",
"hgvs_p": null,
"transcript": "NM_001438857.1",
"protein_id": "NP_001425786.1",
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},
{
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],
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"intron_rank": null,
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"gene_symbol": "MBD5",
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"hgvs_c": "c.-782G>A",
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"transcript": "NM_001438858.1",
"protein_id": "NP_001425787.1",
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},
{
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"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
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"exon_count": 14,
"intron_rank": null,
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"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-933G>A",
"hgvs_p": null,
"transcript": "NM_001438855.1",
"protein_id": "NP_001425784.1",
"transcript_support_level": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
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"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-933G>A",
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"transcript": "ENST00000638043.2",
"protein_id": "ENSP00000490728.2",
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},
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],
"exon_rank": 1,
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},
{
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],
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"gene_symbol": "MBD5",
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"hgvs_c": "c.-992G>A",
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},
{
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"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
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"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-782G>A",
"hgvs_p": null,
"transcript": "NM_001438861.1",
"protein_id": "NP_001425790.1",
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"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MBD5",
"gene_hgnc_id": 20444,
"hgvs_c": "c.-933G>A",
"hgvs_p": null,
"transcript": "NM_018328.5",
"protein_id": "NP_060798.2",
"transcript_support_level": null,
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"mane_select": null,
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},
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"phenotype_combined": "not provided",
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}
],
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}