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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-148468542-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=148468542&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 11,
"criteria": [
"BP4_Moderate",
"BP6",
"BS1",
"BS2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "MBD5",
"hgnc_id": 20444,
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"inheritance_mode": "AD",
"pathogenic_score": 0,
"score": -11,
"transcript": "NM_001438854.1",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Moderate,BP6,BS1,BS2",
"acmg_score": -11,
"allele_count_reference_population": 575,
"alphamissense_prediction": null,
"alphamissense_score": 0.3626,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Uncertain_significance",
"bayesdelnoaf_score": -0.08,
"chr": "2",
"clinvar_classification": "Conflicting classifications of pathogenicity",
"clinvar_disease": " autosomal dominant 1,Inborn genetic diseases,Intellectual disability,developmental delay with intractable seizures,not provided,not specified",
"clinvar_review_status": "criteria provided, conflicting classifications",
"clinvar_submissions_summary": "US:1 LB:4 B:2",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.17121613025665283,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1727,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10732,
"cdna_start": 2117,
"cds_end": null,
"cds_length": 5184,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_001378120.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000642680.2",
"protein_coding": true,
"protein_id": "NP_001365049.1",
"strand": true,
"transcript": "NM_001378120.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1727,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 10732,
"cdna_start": 2117,
"cds_end": null,
"cds_length": 5184,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000642680.2",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001378120.1",
"protein_coding": true,
"protein_id": "ENSP00000493871.2",
"strand": true,
"transcript": "ENST00000642680.2",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1494,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9512,
"cdna_start": 1596,
"cds_end": null,
"cds_length": 4485,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000407073.5",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000386049.1",
"strand": true,
"transcript": "ENST00000407073.5",
"transcript_support_level": 1
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1740,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10830,
"cdna_start": 2176,
"cds_end": null,
"cds_length": 5223,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_001438854.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425783.1",
"strand": true,
"transcript": "NM_001438854.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1727,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10791,
"cdna_start": 2176,
"cds_end": null,
"cds_length": 5184,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_001438856.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425785.1",
"strand": true,
"transcript": "NM_001438856.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1727,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10819,
"cdna_start": 2204,
"cds_end": null,
"cds_length": 5184,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_001438857.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425786.1",
"strand": true,
"transcript": "NM_001438857.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1727,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10581,
"cdna_start": 1966,
"cds_end": null,
"cds_length": 5184,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "NM_001438858.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425787.1",
"strand": true,
"transcript": "NM_001438858.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1507,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10072,
"cdna_start": 2117,
"cds_end": null,
"cds_length": 4524,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_001438855.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425784.1",
"strand": true,
"transcript": "NM_001438855.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1507,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7019,
"cdna_start": 1702,
"cds_end": null,
"cds_length": 4524,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000638043.2",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000490728.2",
"strand": true,
"transcript": "ENST00000638043.2",
"transcript_support_level": 5
},
{
"aa_alt": "Q",
"aa_end": null,
"aa_length": 1494,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10033,
"cdna_start": 2117,
"cds_end": null,
"cds_length": 4485,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_001438859.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425788.1",
"strand": true,
"transcript": "NM_001438859.1",
"transcript_support_level": null
},
{
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"aa_length": 1494,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10092,
"cdna_start": 2176,
"cds_end": null,
"cds_length": 4485,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_001438860.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425789.1",
"strand": true,
"transcript": "NM_001438860.1",
"transcript_support_level": null
},
{
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"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9882,
"cdna_start": 1966,
"cds_end": null,
"cds_length": 4485,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "NM_001438861.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425790.1",
"strand": true,
"transcript": "NM_001438861.1",
"transcript_support_level": null
},
{
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"cds_end": null,
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"consequences": [
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],
"exon_count": 14,
"exon_rank": 8,
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"feature": "NM_001438862.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001425791.1",
"strand": true,
"transcript": "NM_001438862.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9512,
"cdna_start": 1596,
"cds_end": null,
"cds_length": 4485,
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"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_018328.5",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_060798.2",
"strand": true,
"transcript": "NM_018328.5",
"transcript_support_level": null
},
{
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"aa_ref": "R",
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"biotype": "protein_coding",
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"cdna_end": null,
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"cdna_start": 1697,
"cds_end": null,
"cds_length": 2556,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000627651.2",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000486370.1",
"strand": true,
"transcript": "ENST00000627651.2",
"transcript_support_level": 5
},
{
"aa_alt": "Q",
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"aa_length": 1740,
"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10146,
"cdna_start": 1492,
"cds_end": null,
"cds_length": 5223,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "XM_011511472.3",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_011509774.1",
"strand": true,
"transcript": "XM_011511472.3",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
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"cdna_start": 2117,
"cds_end": null,
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"consequences": [
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],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "XM_047445055.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047301011.1",
"strand": true,
"transcript": "XM_047445055.1",
"transcript_support_level": null
},
{
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"cds_end": null,
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"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "XM_047445056.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047301012.1",
"strand": true,
"transcript": "XM_047445056.1",
"transcript_support_level": null
},
{
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"biotype": "protein_coding",
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"cds_end": null,
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"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "XM_047445057.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047301013.1",
"strand": true,
"transcript": "XM_047445057.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 37861,
"cdna_start": 29207,
"cds_end": null,
"cds_length": 5223,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "XM_047445058.1",
"gene_hgnc_id": 20444,
"gene_symbol": "MBD5",
"hgvs_c": "c.599G>A",
"hgvs_p": "p.Arg200Gln",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047301014.1",
"strand": true,
"transcript": "XM_047445058.1",
"transcript_support_level": null
},
{
"aa_alt": "Q",
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"aa_length": 1740,
"aa_ref": "R",
"aa_start": 200,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 11038,
"cdna_start": 2384,
"cds_end": null,
"cds_length": 5223,
"cds_start": 599,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "XM_047445063.1",
"gene_hgnc_id": 20444,
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