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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-159325798-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=159325798&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 159325798,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_013450.4",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 35,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6064A>G",
"hgvs_p": "p.Thr2022Ala",
"transcript": "NM_013450.4",
"protein_id": "NP_038478.2",
"transcript_support_level": null,
"aa_start": 2022,
"aa_end": null,
"aa_length": 2168,
"cds_start": 6064,
"cds_end": null,
"cds_length": 6507,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000392783.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_013450.4"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 35,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6064A>G",
"hgvs_p": "p.Thr2022Ala",
"transcript": "ENST00000392783.7",
"protein_id": "ENSP00000376534.2",
"transcript_support_level": 5,
"aa_start": 2022,
"aa_end": null,
"aa_length": 2168,
"cds_start": 6064,
"cds_end": null,
"cds_length": 6507,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_013450.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000392783.7"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 34,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.5956A>G",
"hgvs_p": "p.Thr1986Ala",
"transcript": "ENST00000392782.5",
"protein_id": "ENSP00000376533.1",
"transcript_support_level": 1,
"aa_start": 1986,
"aa_end": null,
"aa_length": 2132,
"cds_start": 5956,
"cds_end": null,
"cds_length": 6399,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000392782.5"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 36,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6064A>G",
"hgvs_p": "p.Thr2022Ala",
"transcript": "ENST00000911534.1",
"protein_id": "ENSP00000581593.1",
"transcript_support_level": null,
"aa_start": 2022,
"aa_end": null,
"aa_length": 2168,
"cds_start": 6064,
"cds_end": null,
"cds_length": 6507,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911534.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 35,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6064A>G",
"hgvs_p": "p.Thr2022Ala",
"transcript": "ENST00000911538.1",
"protein_id": "ENSP00000581597.1",
"transcript_support_level": null,
"aa_start": 2022,
"aa_end": null,
"aa_length": 2168,
"cds_start": 6064,
"cds_end": null,
"cds_length": 6507,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911538.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 34,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.5956A>G",
"hgvs_p": "p.Thr1986Ala",
"transcript": "ENST00000718451.1",
"protein_id": "ENSP00000520831.1",
"transcript_support_level": null,
"aa_start": 1986,
"aa_end": null,
"aa_length": 2160,
"cds_start": 5956,
"cds_end": null,
"cds_length": 6483,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000718451.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 35,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6007A>G",
"hgvs_p": "p.Thr2003Ala",
"transcript": "NM_001329857.2",
"protein_id": "NP_001316786.1",
"transcript_support_level": null,
"aa_start": 2003,
"aa_end": null,
"aa_length": 2149,
"cds_start": 6007,
"cds_end": null,
"cds_length": 6450,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001329857.2"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 35,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.5989A>G",
"hgvs_p": "p.Thr1997Ala",
"transcript": "NM_001329858.2",
"protein_id": "NP_001316787.1",
"transcript_support_level": null,
"aa_start": 1997,
"aa_end": null,
"aa_length": 2143,
"cds_start": 5989,
"cds_end": null,
"cds_length": 6432,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001329858.2"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 34,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.5962A>G",
"hgvs_p": "p.Thr1988Ala",
"transcript": "ENST00000911535.1",
"protein_id": "ENSP00000581594.1",
"transcript_support_level": null,
"aa_start": 1988,
"aa_end": null,
"aa_length": 2134,
"cds_start": 5962,
"cds_end": null,
"cds_length": 6405,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911535.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 34,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.5956A>G",
"hgvs_p": "p.Thr1986Ala",
"transcript": "NM_001289975.1",
"protein_id": "NP_001276904.1",
"transcript_support_level": null,
"aa_start": 1986,
"aa_end": null,
"aa_length": 2132,
"cds_start": 5956,
"cds_end": null,
"cds_length": 6399,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001289975.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 33,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.5668A>G",
"hgvs_p": "p.Thr1890Ala",
"transcript": "ENST00000911537.1",
"protein_id": "ENSP00000581596.1",
"transcript_support_level": null,
"aa_start": 1890,
"aa_end": null,
"aa_length": 2036,
"cds_start": 5668,
"cds_end": null,
"cds_length": 6111,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911537.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 32,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.5500A>G",
"hgvs_p": "p.Thr1834Ala",
"transcript": "ENST00000911536.1",
"protein_id": "ENSP00000581595.1",
"transcript_support_level": null,
"aa_start": 1834,
"aa_end": null,
"aa_length": 1980,
"cds_start": 5500,
"cds_end": null,
"cds_length": 5943,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911536.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 34,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6220A>G",
"hgvs_p": "p.Thr2074Ala",
"transcript": "XM_047444037.1",
"protein_id": "XP_047299993.1",
"transcript_support_level": null,
"aa_start": 2074,
"aa_end": null,
"aa_length": 2248,
"cds_start": 6220,
"cds_end": null,
"cds_length": 6747,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444037.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 36,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_005246488.3",
"protein_id": "XP_005246545.2",
"transcript_support_level": null,
"aa_start": 2068,
"aa_end": null,
"aa_length": 2242,
"cds_start": 6202,
"cds_end": null,
"cds_length": 6729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005246488.3"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 35,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_005246489.5",
"protein_id": "XP_005246546.2",
"transcript_support_level": null,
"aa_start": 2068,
"aa_end": null,
"aa_length": 2242,
"cds_start": 6202,
"cds_end": null,
"cds_length": 6729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005246489.5"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 41,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_017003920.2",
"protein_id": "XP_016859409.1",
"transcript_support_level": null,
"aa_start": 2068,
"aa_end": null,
"aa_length": 2242,
"cds_start": 6202,
"cds_end": null,
"cds_length": 6729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017003920.2"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 40,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_047444038.1",
"protein_id": "XP_047299994.1",
"transcript_support_level": null,
"aa_start": 2068,
"aa_end": null,
"aa_length": 2242,
"cds_start": 6202,
"cds_end": null,
"cds_length": 6729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444038.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 40,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_047444039.1",
"protein_id": "XP_047299995.1",
"transcript_support_level": null,
"aa_start": 2068,
"aa_end": null,
"aa_length": 2242,
"cds_start": 6202,
"cds_end": null,
"cds_length": 6729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444039.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 39,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_047444040.1",
"protein_id": "XP_047299996.1",
"transcript_support_level": null,
"aa_start": 2068,
"aa_end": null,
"aa_length": 2242,
"cds_start": 6202,
"cds_end": null,
"cds_length": 6729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444040.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 40,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_047444041.1",
"protein_id": "XP_047299997.1",
"transcript_support_level": null,
"aa_start": 2068,
"aa_end": null,
"aa_length": 2242,
"cds_start": 6202,
"cds_end": null,
"cds_length": 6729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444041.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 40,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_047444042.1",
"protein_id": "XP_047299998.1",
"transcript_support_level": null,
"aa_start": 2068,
"aa_end": null,
"aa_length": 2242,
"cds_start": 6202,
"cds_end": null,
"cds_length": 6729,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444042.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 40,
"exon_rank_end": null,
"exon_count": 43,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BAZ2B",
"gene_hgnc_id": 963,
"hgvs_c": "c.6202A>G",
"hgvs_p": "p.Thr2068Ala",
"transcript": "XM_047444043.1",
"protein_id": "XP_047299999.1",
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}
],
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}