← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-160284846-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=160284846&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 160284846,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_016836.4",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.829A>G",
"hgvs_p": "p.Ile277Val",
"transcript": "NM_016836.4",
"protein_id": "NP_058520.1",
"transcript_support_level": null,
"aa_start": 277,
"aa_end": null,
"aa_length": 406,
"cds_start": 829,
"cds_end": null,
"cds_length": 1221,
"cdna_start": 1273,
"cdna_end": null,
"cdna_length": 4286,
"mane_select": "ENST00000348849.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_016836.4"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.829A>G",
"hgvs_p": "p.Ile277Val",
"transcript": "ENST00000348849.8",
"protein_id": "ENSP00000294904.6",
"transcript_support_level": 1,
"aa_start": 277,
"aa_end": null,
"aa_length": 406,
"cds_start": 829,
"cds_end": null,
"cds_length": 1221,
"cdna_start": 1273,
"cdna_end": null,
"cdna_length": 4286,
"mane_select": "NM_016836.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000348849.8"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.721A>G",
"hgvs_p": "p.Ile241Val",
"transcript": "ENST00000409075.5",
"protein_id": "ENSP00000386347.1",
"transcript_support_level": 1,
"aa_start": 241,
"aa_end": null,
"aa_length": 370,
"cds_start": 721,
"cds_end": null,
"cds_length": 1113,
"cdna_start": 846,
"cdna_end": null,
"cdna_length": 1550,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000409075.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "n.955A>G",
"hgvs_p": null,
"transcript": "ENST00000474820.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4016,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000474820.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "n.948A>G",
"hgvs_p": null,
"transcript": "ENST00000491781.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1533,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000491781.5"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.829A>G",
"hgvs_p": "p.Ile277Val",
"transcript": "ENST00000851246.1",
"protein_id": "ENSP00000521305.1",
"transcript_support_level": null,
"aa_start": 277,
"aa_end": null,
"aa_length": 422,
"cds_start": 829,
"cds_end": null,
"cds_length": 1269,
"cdna_start": 1566,
"cdna_end": null,
"cdna_length": 2774,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851246.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.826A>G",
"hgvs_p": "p.Ile276Val",
"transcript": "ENST00000851250.1",
"protein_id": "ENSP00000521309.1",
"transcript_support_level": null,
"aa_start": 276,
"aa_end": null,
"aa_length": 421,
"cds_start": 826,
"cds_end": null,
"cds_length": 1266,
"cdna_start": 1270,
"cdna_end": null,
"cdna_length": 2032,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851250.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.823A>G",
"hgvs_p": "p.Ile275Val",
"transcript": "ENST00000851254.1",
"protein_id": "ENSP00000521313.1",
"transcript_support_level": null,
"aa_start": 275,
"aa_end": null,
"aa_length": 420,
"cds_start": 823,
"cds_end": null,
"cds_length": 1263,
"cdna_start": 900,
"cdna_end": null,
"cdna_length": 1652,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851254.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.820A>G",
"hgvs_p": "p.Ile274Val",
"transcript": "ENST00000851245.1",
"protein_id": "ENSP00000521304.1",
"transcript_support_level": null,
"aa_start": 274,
"aa_end": null,
"aa_length": 419,
"cds_start": 820,
"cds_end": null,
"cds_length": 1260,
"cdna_start": 1439,
"cdna_end": null,
"cdna_length": 4500,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851245.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.817A>G",
"hgvs_p": "p.Ile273Val",
"transcript": "ENST00000851249.1",
"protein_id": "ENSP00000521308.1",
"transcript_support_level": null,
"aa_start": 273,
"aa_end": null,
"aa_length": 418,
"cds_start": 817,
"cds_end": null,
"cds_length": 1257,
"cdna_start": 1438,
"cdna_end": null,
"cdna_length": 2164,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851249.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.826A>G",
"hgvs_p": "p.Ile276Val",
"transcript": "ENST00000851247.1",
"protein_id": "ENSP00000521306.1",
"transcript_support_level": null,
"aa_start": 276,
"aa_end": null,
"aa_length": 405,
"cds_start": 826,
"cds_end": null,
"cds_length": 1218,
"cdna_start": 1352,
"cdna_end": null,
"cdna_length": 2512,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851247.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.823A>G",
"hgvs_p": "p.Ile275Val",
"transcript": "ENST00000851253.1",
"protein_id": "ENSP00000521312.1",
"transcript_support_level": null,
"aa_start": 275,
"aa_end": null,
"aa_length": 404,
"cds_start": 823,
"cds_end": null,
"cds_length": 1215,
"cdna_start": 967,
"cdna_end": null,
"cdna_length": 1677,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851253.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.820A>G",
"hgvs_p": "p.Ile274Val",
"transcript": "NM_002897.5",
"protein_id": "NP_002888.1",
"transcript_support_level": null,
"aa_start": 274,
"aa_end": null,
"aa_length": 403,
"cds_start": 820,
"cds_end": null,
"cds_length": 1212,
"cdna_start": 1264,
"cdna_end": null,
"cdna_length": 4277,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_002897.5"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.820A>G",
"hgvs_p": "p.Ile274Val",
"transcript": "ENST00000958094.1",
"protein_id": "ENSP00000628153.1",
"transcript_support_level": null,
"aa_start": 274,
"aa_end": null,
"aa_length": 402,
"cds_start": 820,
"cds_end": null,
"cds_length": 1209,
"cdna_start": 963,
"cdna_end": null,
"cdna_length": 1584,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000958094.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.811A>G",
"hgvs_p": "p.Ile271Val",
"transcript": "ENST00000851252.1",
"protein_id": "ENSP00000521311.1",
"transcript_support_level": null,
"aa_start": 271,
"aa_end": null,
"aa_length": 400,
"cds_start": 811,
"cds_end": null,
"cds_length": 1203,
"cdna_start": 1182,
"cdna_end": null,
"cdna_length": 1886,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851252.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.826A>G",
"hgvs_p": "p.Ile276Val",
"transcript": "ENST00000851251.1",
"protein_id": "ENSP00000521310.1",
"transcript_support_level": null,
"aa_start": 276,
"aa_end": null,
"aa_length": 378,
"cds_start": 826,
"cds_end": null,
"cds_length": 1137,
"cdna_start": 1284,
"cdna_end": null,
"cdna_length": 1882,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851251.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.820A>G",
"hgvs_p": "p.Ile274Val",
"transcript": "ENST00000851248.1",
"protein_id": "ENSP00000521307.1",
"transcript_support_level": null,
"aa_start": 274,
"aa_end": null,
"aa_length": 376,
"cds_start": 820,
"cds_end": null,
"cds_length": 1131,
"cdna_start": 1536,
"cdna_end": null,
"cdna_length": 2159,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851248.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.721A>G",
"hgvs_p": "p.Ile241Val",
"transcript": "ENST00000409289.6",
"protein_id": "ENSP00000386571.2",
"transcript_support_level": 5,
"aa_start": 241,
"aa_end": null,
"aa_length": 370,
"cds_start": 721,
"cds_end": null,
"cds_length": 1113,
"cdna_start": 786,
"cdna_end": null,
"cdna_length": 1490,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000409289.6"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.721A>G",
"hgvs_p": "p.Ile241Val",
"transcript": "ENST00000409972.5",
"protein_id": "ENSP00000387280.1",
"transcript_support_level": 5,
"aa_start": 241,
"aa_end": null,
"aa_length": 370,
"cds_start": 721,
"cds_end": null,
"cds_length": 1113,
"cdna_start": 1171,
"cdna_end": null,
"cdna_length": 1815,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000409972.5"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "c.829A>G",
"hgvs_p": "p.Ile277Val",
"transcript": "XM_047445368.1",
"protein_id": "XP_047301324.1",
"transcript_support_level": null,
"aa_start": 277,
"aa_end": null,
"aa_length": 422,
"cds_start": 829,
"cds_end": null,
"cds_length": 1269,
"cdna_start": 1273,
"cdna_end": null,
"cdna_length": 1960,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047445368.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"hgvs_c": "n.22A>G",
"hgvs_p": null,
"transcript": "ENST00000490637.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4078,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000490637.5"
}
],
"gene_symbol": "RBMS1",
"gene_hgnc_id": 9907,
"dbsnp": "rs960391392",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.23046153783798218,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.171,
"revel_prediction": "Benign",
"alphamissense_score": 0.0819,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.32,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 7.822,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_016836.4",
"gene_symbol": "RBMS1",
"hgnc_id": 9907,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.829A>G",
"hgvs_p": "p.Ile277Val"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}