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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-165679159-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=165679159&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 165679159,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_001439057.1",
"consequences": [
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "NM_001172173.2",
"protein_id": "NP_001165644.1",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1489,
"cdna_end": null,
"cdna_length": 11737,
"mane_select": "ENST00000651982.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001172173.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "ENST00000651982.1",
"protein_id": "ENSP00000498841.1",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1489,
"cdna_end": null,
"cdna_length": 11737,
"mane_select": "NM_001172173.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000651982.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "ENST00000342316.8",
"protein_id": "ENSP00000344042.4",
"transcript_support_level": 1,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1436,
"cdna_end": null,
"cdna_length": 11684,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000342316.8"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1260C>T",
"hgvs_p": "p.Asp420Asp",
"transcript": "NM_001439057.1",
"protein_id": "NP_001425986.1",
"transcript_support_level": null,
"aa_start": 420,
"aa_end": null,
"aa_length": 617,
"cds_start": 1260,
"cds_end": null,
"cds_length": 1854,
"cdna_start": 1412,
"cdna_end": null,
"cdna_length": 11660,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001439057.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1260C>T",
"hgvs_p": "p.Asp420Asp",
"transcript": "ENST00000409420.1",
"protein_id": "ENSP00000387195.1",
"transcript_support_level": 5,
"aa_start": 420,
"aa_end": null,
"aa_length": 617,
"cds_start": 1260,
"cds_end": null,
"cds_length": 1854,
"cdna_start": 1510,
"cdna_end": null,
"cdna_length": 2545,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000409420.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "NM_024969.3",
"protein_id": "NP_079245.2",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1439,
"cdna_end": null,
"cdna_length": 11687,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_024969.3"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "ENST00000314499.11",
"protein_id": "ENSP00000318258.7",
"transcript_support_level": 5,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1540,
"cdna_end": null,
"cdna_length": 11788,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000314499.11"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "ENST00000871763.1",
"protein_id": "ENSP00000541822.1",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1612,
"cdna_end": null,
"cdna_length": 3162,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871763.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "ENST00000871764.1",
"protein_id": "ENSP00000541823.1",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1546,
"cdna_end": null,
"cdna_length": 3096,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871764.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "ENST00000871765.1",
"protein_id": "ENSP00000541824.1",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1357,
"cdna_end": null,
"cdna_length": 2907,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871765.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "ENST00000871766.1",
"protein_id": "ENSP00000541825.1",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1394,
"cdna_end": null,
"cdna_length": 2944,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871766.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.960C>T",
"hgvs_p": "p.Asp320Asp",
"transcript": "ENST00000871767.1",
"protein_id": "ENSP00000541826.1",
"transcript_support_level": null,
"aa_start": 320,
"aa_end": null,
"aa_length": 517,
"cds_start": 960,
"cds_end": null,
"cds_length": 1554,
"cdna_start": 1117,
"cdna_end": null,
"cdna_length": 2641,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000871767.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "ENST00000421875.5",
"protein_id": "ENSP00000412081.1",
"transcript_support_level": 5,
"aa_start": 388,
"aa_end": null,
"aa_length": 436,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1312,
"cdna_start": 1540,
"cdna_end": null,
"cdna_length": 1688,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000421875.5"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1338C>T",
"hgvs_p": "p.Asp446Asp",
"transcript": "XM_047445907.1",
"protein_id": "XP_047301863.1",
"transcript_support_level": null,
"aa_start": 446,
"aa_end": null,
"aa_length": 643,
"cds_start": 1338,
"cds_end": null,
"cds_length": 1932,
"cdna_start": 1490,
"cdna_end": null,
"cdna_length": 11738,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047445907.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "XM_024453155.2",
"protein_id": "XP_024308923.1",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 1612,
"cdna_end": null,
"cdna_length": 11860,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024453155.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"hgvs_c": "c.1164C>T",
"hgvs_p": "p.Asp388Asp",
"transcript": "XM_047445908.1",
"protein_id": "XP_047301864.1",
"transcript_support_level": null,
"aa_start": 388,
"aa_end": null,
"aa_length": 585,
"cds_start": 1164,
"cds_end": null,
"cds_length": 1758,
"cdna_start": 2623,
"cdna_end": null,
"cdna_length": 12871,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047445908.1"
}
],
"gene_symbol": "CSRNP3",
"gene_hgnc_id": 30729,
"dbsnp": "rs375174523",
"frequency_reference_population": 0.0000075254943,
"hom_count_reference_population": 0,
"allele_count_reference_population": 11,
"gnomad_exomes_af": 0.00000752549,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 11,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.800000011920929,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.8,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.386,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -5,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong,BP6_Moderate,BP7",
"acmg_by_gene": [
{
"score": -5,
"benign_score": 7,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong",
"BP6_Moderate",
"BP7"
],
"verdict": "Likely_benign",
"transcript": "NM_001439057.1",
"gene_symbol": "CSRNP3",
"hgnc_id": 30729,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.1260C>T",
"hgvs_p": "p.Asp420Asp"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}