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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-174436190-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=174436190&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 4,
          "criteria": [
            "BP4_Strong"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "GPR155",
          "hgnc_id": 22951,
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "inheritance_mode": "AR",
          "pathogenic_score": 0,
          "score": -4,
          "transcript": "NM_152529.7",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Strong",
      "acmg_score": -4,
      "allele_count_reference_population": 34,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.0669,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.81,
      "chr": "2",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not specified",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.03007909655570984,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7346,
          "cdna_start": 2727,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "NM_152529.7",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000392552.7",
          "protein_coding": true,
          "protein_id": "NP_689742.4",
          "strand": false,
          "transcript": "NM_152529.7",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 7346,
          "cdna_start": 2727,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000392552.7",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_152529.7",
          "protein_coding": true,
          "protein_id": "ENSP00000376335.2",
          "strand": false,
          "transcript": "ENST00000392552.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3930,
          "cdna_start": 2884,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000295500.8",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000295500.4",
          "strand": false,
          "transcript": "ENST00000295500.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4876,
          "cdna_start": 2838,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000392551.6",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000376334.2",
          "strand": false,
          "transcript": "ENST00000392551.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 842,
          "aa_ref": "A",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7321,
          "cdna_start": 2702,
          "cds_end": null,
          "cds_length": 2529,
          "cds_start": 2455,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000614352.4",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2455G>A",
          "hgvs_p": "p.Ala819Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000481104.1",
          "strand": false,
          "transcript": "ENST00000614352.4",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7495,
          "cdna_start": 2876,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "NM_001033045.4",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001028217.1",
          "strand": false,
          "transcript": "NM_001033045.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7392,
          "cdna_start": 2773,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "NM_001267050.2",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001253979.1",
          "strand": false,
          "transcript": "NM_001267050.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3585,
          "cdna_start": 2860,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000886492.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000556551.1",
          "strand": false,
          "transcript": "ENST00000886492.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3507,
          "cdna_start": 2770,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000932232.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000602291.1",
          "strand": false,
          "transcript": "ENST00000932232.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3625,
          "cdna_start": 2888,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 18,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000932233.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000602292.1",
          "strand": false,
          "transcript": "ENST00000932233.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4453,
          "cdna_start": 3072,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000949639.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619698.1",
          "strand": false,
          "transcript": "ENST00000949639.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 870,
          "aa_ref": "A",
          "aa_start": 847,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3623,
          "cdna_start": 2923,
          "cds_end": null,
          "cds_length": 2613,
          "cds_start": 2539,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000949644.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2539G>A",
          "hgvs_p": "p.Ala847Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619703.1",
          "strand": false,
          "transcript": "ENST00000949644.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 856,
          "aa_ref": "A",
          "aa_start": 833,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3419,
          "cdna_start": 2719,
          "cds_end": null,
          "cds_length": 2571,
          "cds_start": 2497,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000949645.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2497G>A",
          "hgvs_p": "p.Ala833Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619704.1",
          "strand": false,
          "transcript": "ENST00000949645.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 842,
          "aa_ref": "A",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7262,
          "cdna_start": 2643,
          "cds_end": null,
          "cds_length": 2529,
          "cds_start": 2455,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "NM_001267051.2",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2455G>A",
          "hgvs_p": "p.Ala819Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001253980.1",
          "strand": false,
          "transcript": "NM_001267051.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 842,
          "aa_ref": "A",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3529,
          "cdna_start": 2792,
          "cds_end": null,
          "cds_length": 2529,
          "cds_start": 2455,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000886493.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2455G>A",
          "hgvs_p": "p.Ala819Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000556552.1",
          "strand": false,
          "transcript": "ENST00000886493.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 842,
          "aa_ref": "A",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3462,
          "cdna_start": 2762,
          "cds_end": null,
          "cds_length": 2529,
          "cds_start": 2455,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000949640.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2455G>A",
          "hgvs_p": "p.Ala819Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619699.1",
          "strand": false,
          "transcript": "ENST00000949640.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 842,
          "aa_ref": "A",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3488,
          "cdna_start": 2788,
          "cds_end": null,
          "cds_length": 2529,
          "cds_start": 2455,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000949641.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2455G>A",
          "hgvs_p": "p.Ala819Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619700.1",
          "strand": false,
          "transcript": "ENST00000949641.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 842,
          "aa_ref": "A",
          "aa_start": 819,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3454,
          "cdna_start": 2754,
          "cds_end": null,
          "cds_length": 2529,
          "cds_start": 2455,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000949642.1",
          "gene_hgnc_id": 22951,
          "gene_symbol": "GPR155",
          "hgvs_c": "c.2455G>A",
          "hgvs_p": "p.Ala819Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619701.1",
          "strand": false,
          "transcript": "ENST00000949642.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 835,
          "aa_ref": "A",
          "aa_start": 812,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4087,
          "cdna_start": 2671,
          "cds_end": null,
          "cds_length": 2508,
          "cds_start": 2434,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000886491.1",
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.