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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-17678923-A-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=17678923&ref=A&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 17678923,
      "ref": "A",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_024624.6",
      "consequences": [
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "NM_001142286.2",
          "protein_id": "NP_001135758.1",
          "transcript_support_level": null,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1091,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3276,
          "cdna_start": 3123,
          "cdna_end": null,
          "cdna_length": 5240,
          "mane_select": "ENST00000448223.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001142286.2"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000448223.7",
          "protein_id": "ENSP00000404092.2",
          "transcript_support_level": 1,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1091,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3276,
          "cdna_start": 3123,
          "cdna_end": null,
          "cdna_length": 5240,
          "mane_select": "NM_001142286.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000448223.7"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000351948.8",
          "protein_id": "ENSP00000323439.4",
          "transcript_support_level": 1,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1091,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3276,
          "cdna_start": 3056,
          "cdna_end": null,
          "cdna_length": 5173,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000351948.8"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2924T>A",
          "hgvs_p": "p.Leu975Gln",
          "transcript": "ENST00000922960.1",
          "protein_id": "ENSP00000593019.1",
          "transcript_support_level": null,
          "aa_start": 975,
          "aa_end": null,
          "aa_length": 1117,
          "cds_start": 2924,
          "cds_end": null,
          "cds_length": 3354,
          "cdna_start": 3135,
          "cdna_end": null,
          "cdna_length": 5481,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000922960.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "NM_024624.6",
          "protein_id": "NP_078900.1",
          "transcript_support_level": null,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1091,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3276,
          "cdna_start": 3036,
          "cdna_end": null,
          "cdna_length": 5153,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_024624.6"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 27,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000402989.5",
          "protein_id": "ENSP00000384539.1",
          "transcript_support_level": 2,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1091,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3276,
          "cdna_start": 3247,
          "cdna_end": null,
          "cdna_length": 3729,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000402989.5"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000922961.1",
          "protein_id": "ENSP00000593020.1",
          "transcript_support_level": null,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1091,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3276,
          "cdna_start": 3025,
          "cdna_end": null,
          "cdna_length": 5136,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000922961.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 24,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000922962.1",
          "protein_id": "ENSP00000593021.1",
          "transcript_support_level": null,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1091,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3276,
          "cdna_start": 3053,
          "cdna_end": null,
          "cdna_length": 5162,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000922962.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000922963.1",
          "protein_id": "ENSP00000593022.1",
          "transcript_support_level": null,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1091,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3276,
          "cdna_start": 3118,
          "cdna_end": null,
          "cdna_length": 5208,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000922963.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000960848.1",
          "protein_id": "ENSP00000630907.1",
          "transcript_support_level": null,
          "aa_start": 949,
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          "cds_start": 2846,
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          "cdna_start": 3151,
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        },
        {
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          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
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          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000960849.1",
          "protein_id": "ENSP00000630908.1",
          "transcript_support_level": null,
          "aa_start": 949,
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          "cds_start": 2846,
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        {
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          "strand": false,
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          "exon_count": 27,
          "intron_rank": null,
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          "gene_symbol": "SMC6",
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          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "ENST00000960851.1",
          "protein_id": "ENSP00000630910.1",
          "transcript_support_level": null,
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        },
        {
          "aa_ref": "L",
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 23,
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          "exon_count": 26,
          "intron_rank": null,
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          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2765T>A",
          "hgvs_p": "p.Leu922Gln",
          "transcript": "ENST00000861877.1",
          "protein_id": "ENSP00000531936.1",
          "transcript_support_level": null,
          "aa_start": 922,
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          "aa_length": 1064,
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          "cdna_start": 2980,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000861877.1"
        },
        {
          "aa_ref": "L",
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          "protein_coding": true,
          "strand": false,
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          ],
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          "exon_count": 27,
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          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2765T>A",
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          "transcript": "ENST00000960850.1",
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        {
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          "hgvs_c": "c.2699T>A",
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          "transcript": "ENST00000861876.1",
          "protein_id": "ENSP00000531935.1",
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          "cdna_start": 2976,
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          "cdna_length": 5085,
          "mane_select": null,
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        {
          "aa_ref": "L",
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          "intron_rank": null,
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          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2903T>A",
          "hgvs_p": "p.Leu968Gln",
          "transcript": "XM_011533107.4",
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        {
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          "intron_rank": null,
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          "gene_symbol": "SMC6",
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        {
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        {
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "L",
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          "protein_coding": true,
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          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
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          "gene_symbol": "SMC6",
          "gene_hgnc_id": 20466,
          "hgvs_c": "c.2846T>A",
          "hgvs_p": "p.Leu949Gln",
          "transcript": "XM_017004915.3",
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      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.