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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-178527455-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=178527455&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 2,
          "criteria": [
            "BP4_Moderate"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "TTN",
          "hgnc_id": 12403,
          "hgvs_c": "c.107671G>A",
          "hgvs_p": "p.Gly35891Ser",
          "inheritance_mode": "AD,AR",
          "pathogenic_score": 0,
          "score": -2,
          "transcript": "NM_001267550.2",
          "verdict": "Likely_benign"
        },
        {
          "benign_score": 6,
          "criteria": [
            "BP4_Moderate",
            "BS1"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "TTN-AS1",
          "hgnc_id": 44124,
          "hgvs_c": "n.219+3819C>T",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": -6,
          "transcript": "ENST00000419746.5",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Moderate",
      "acmg_score": -2,
      "allele_count_reference_population": 65,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.1282,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.25,
      "chr": "2",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_disease": "Autosomal recessive limb-girdle muscular dystrophy type 2J,Cardiovascular phenotype,Dilated cardiomyopathy 1G,not provided,not specified",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:4 LB:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.12301412224769592,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 35991,
          "aa_ref": "G",
          "aa_start": 35891,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 109224,
          "cdna_start": 107896,
          "cds_end": null,
          "cds_length": 107976,
          "cds_start": 107671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 363,
          "exon_rank": 362,
          "exon_rank_end": null,
          "feature": "NM_001267550.2",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.107671G>A",
          "hgvs_p": "p.Gly35891Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000589042.5",
          "protein_coding": true,
          "protein_id": "NP_001254479.2",
          "strand": false,
          "transcript": "NM_001267550.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 35991,
          "aa_ref": "G",
          "aa_start": 35891,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 109224,
          "cdna_start": 107896,
          "cds_end": null,
          "cds_length": 107976,
          "cds_start": 107671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 363,
          "exon_rank": 362,
          "exon_rank_end": null,
          "feature": "ENST00000589042.5",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.107671G>A",
          "hgvs_p": "p.Gly35891Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001267550.2",
          "protein_coding": true,
          "protein_id": "ENSP00000467141.1",
          "strand": false,
          "transcript": "ENST00000589042.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 35939,
          "aa_ref": "G",
          "aa_start": 35839,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 109068,
          "cdna_start": 107740,
          "cds_end": null,
          "cds_length": 107820,
          "cds_start": 107515,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 361,
          "exon_rank": 360,
          "exon_rank_end": null,
          "feature": "ENST00000446966.2",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.107515G>A",
          "hgvs_p": "p.Gly35839Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000408004.2",
          "strand": false,
          "transcript": "ENST00000446966.2",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 35899,
          "aa_ref": "G",
          "aa_start": 35799,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 108948,
          "cdna_start": 107620,
          "cds_end": null,
          "cds_length": 107700,
          "cds_start": 107395,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 361,
          "exon_rank": 360,
          "exon_rank_end": null,
          "feature": "ENST00000436599.2",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.107395G>A",
          "hgvs_p": "p.Gly35799Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000405517.2",
          "strand": false,
          "transcript": "ENST00000436599.2",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 35805,
          "aa_ref": "G",
          "aa_start": 35705,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 108666,
          "cdna_start": 107338,
          "cds_end": null,
          "cds_length": 107418,
          "cds_start": 107113,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 356,
          "exon_rank": 355,
          "exon_rank_end": null,
          "feature": "ENST00000426232.6",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.107113G>A",
          "hgvs_p": "p.Gly35705Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000392336.2",
          "strand": false,
          "transcript": "ENST00000426232.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4592,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000419746.5",
          "gene_hgnc_id": 44124,
          "gene_symbol": "TTN-AS1",
          "hgvs_c": "n.219+3819C>T",
          "hgvs_p": null,
          "intron_rank": 2,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000419746.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 35991,
          "aa_ref": "G",
          "aa_start": 35891,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 109488,
          "cdna_start": 108160,
          "cds_end": null,
          "cds_length": 107976,
          "cds_start": 107671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 365,
          "exon_rank": 364,
          "exon_rank_end": null,
          "feature": "ENST00000412264.2",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.107671G>A",
          "hgvs_p": "p.Gly35891Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000394672.2",
          "strand": false,
          "transcript": "ENST00000412264.2",
          "transcript_support_level": 3
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 35963,
          "aa_ref": "G",
          "aa_start": 35863,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 109140,
          "cdna_start": 107812,
          "cds_end": null,
          "cds_length": 107892,
          "cds_start": 107587,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 362,
          "exon_rank": 361,
          "exon_rank_end": null,
          "feature": "ENST00000425332.3",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.107587G>A",
          "hgvs_p": "p.Gly35863Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000396805.3",
          "strand": false,
          "transcript": "ENST00000425332.3",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 35853,
          "aa_ref": "G",
          "aa_start": 35753,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 108810,
          "cdna_start": 107482,
          "cds_end": null,
          "cds_length": 107562,
          "cds_start": 107257,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 360,
          "exon_rank": 359,
          "exon_rank_end": null,
          "feature": "ENST00000715174.1",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.107257G>A",
          "hgvs_p": "p.Gly35753Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000520370.1",
          "strand": false,
          "transcript": "ENST00000715174.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 34350,
          "aa_ref": "G",
          "aa_start": 34250,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 104301,
          "cdna_start": 102973,
          "cds_end": null,
          "cds_length": 103053,
          "cds_start": 102748,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 313,
          "exon_rank": 312,
          "exon_rank_end": null,
          "feature": "NM_001256850.1",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.102748G>A",
          "hgvs_p": "p.Gly34250Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001243779.1",
          "strand": false,
          "transcript": "NM_001256850.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 34350,
          "aa_ref": "G",
          "aa_start": 34250,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 104301,
          "cdna_start": 102973,
          "cds_end": null,
          "cds_length": 103053,
          "cds_start": 102748,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 313,
          "exon_rank": 312,
          "exon_rank_end": null,
          "feature": "ENST00000591111.5",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.102748G>A",
          "hgvs_p": "p.Gly34250Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000465570.1",
          "strand": false,
          "transcript": "ENST00000591111.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 33423,
          "aa_ref": "G",
          "aa_start": 33323,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 101520,
          "cdna_start": 100192,
          "cds_end": null,
          "cds_length": 100272,
          "cds_start": 99967,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 312,
          "exon_rank": 311,
          "exon_rank_end": null,
          "feature": "NM_133378.4",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.99967G>A",
          "hgvs_p": "p.Gly33323Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_596869.4",
          "strand": false,
          "transcript": "NM_133378.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 33423,
          "aa_ref": "G",
          "aa_start": 33323,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 101520,
          "cdna_start": 100192,
          "cds_end": null,
          "cds_length": 100272,
          "cds_start": 99967,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 312,
          "exon_rank": 311,
          "exon_rank_end": null,
          "feature": "ENST00000342992.11",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.99967G>A",
          "hgvs_p": "p.Gly33323Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000343764.6",
          "strand": false,
          "transcript": "ENST00000342992.11",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 27118,
          "aa_ref": "G",
          "aa_start": 27018,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 82605,
          "cdna_start": 81277,
          "cds_end": null,
          "cds_length": 81357,
          "cds_start": 81052,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 192,
          "exon_rank": 191,
          "exon_rank_end": null,
          "feature": "NM_133437.4",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.81052G>A",
          "hgvs_p": "p.Gly27018Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_597681.4",
          "strand": false,
          "transcript": "NM_133437.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 27118,
          "aa_ref": "G",
          "aa_start": 27018,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 82380,
          "cdna_start": 81052,
          "cds_end": null,
          "cds_length": 81357,
          "cds_start": 81052,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 191,
          "exon_rank": 190,
          "exon_rank_end": null,
          "feature": "ENST00000342175.12",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.81052G>A",
          "hgvs_p": "p.Gly27018Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000340554.6",
          "strand": false,
          "transcript": "ENST00000342175.12",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 27051,
          "aa_ref": "G",
          "aa_start": 26951,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 82404,
          "cdna_start": 81076,
          "cds_end": null,
          "cds_length": 81156,
          "cds_start": 80851,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 192,
          "exon_rank": 191,
          "exon_rank_end": null,
          "feature": "NM_133432.3",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.80851G>A",
          "hgvs_p": "p.Gly26951Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_597676.3",
          "strand": false,
          "transcript": "NM_133432.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 27051,
          "aa_ref": "G",
          "aa_start": 26951,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 82179,
          "cdna_start": 80851,
          "cds_end": null,
          "cds_length": 81156,
          "cds_start": 80851,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 191,
          "exon_rank": 190,
          "exon_rank_end": null,
          "feature": "ENST00000359218.11",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.80851G>A",
          "hgvs_p": "p.Gly26951Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000352154.5",
          "strand": false,
          "transcript": "ENST00000359218.11",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 26926,
          "aa_ref": "G",
          "aa_start": 26826,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 82029,
          "cdna_start": 80701,
          "cds_end": null,
          "cds_length": 80781,
          "cds_start": 80476,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 191,
          "exon_rank": 190,
          "exon_rank_end": null,
          "feature": "NM_003319.4",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.80476G>A",
          "hgvs_p": "p.Gly26826Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_003310.4",
          "strand": false,
          "transcript": "NM_003319.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.