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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-178531093-GC-AG (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=178531093&ref=GC&alt=AG&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "TTN",
          "hgnc_id": 12403,
          "hgvs_c": "c.105521_105522delGCinsCT",
          "hgvs_p": "p.Arg35174Pro",
          "inheritance_mode": "AD,AR",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "NM_001267550.2",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "TTN-AS1",
          "hgnc_id": 44124,
          "hgvs_c": "n.220-4639_220-4638delGCinsAG",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "ENST00000419746.5",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "",
      "acmg_score": 0,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "AG",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "2",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 35991,
          "aa_ref": "R",
          "aa_start": 35174,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 109224,
          "cdna_start": 105747,
          "cds_end": null,
          "cds_length": 107976,
          "cds_start": 105521,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 363,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001267550.2",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.105521_105522delGCinsCT",
          "hgvs_p": "p.Arg35174Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000589042.5",
          "protein_coding": true,
          "protein_id": "NP_001254479.2",
          "strand": false,
          "transcript": "NM_001267550.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 35991,
          "aa_ref": "R",
          "aa_start": 35174,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 109224,
          "cdna_start": 105747,
          "cds_end": null,
          "cds_length": 107976,
          "cds_start": 105521,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 363,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000589042.5",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.105521_105522delGCinsCT",
          "hgvs_p": "p.Arg35174Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001267550.2",
          "protein_coding": true,
          "protein_id": "ENSP00000467141.1",
          "strand": false,
          "transcript": "ENST00000589042.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 35939,
          "aa_ref": "R",
          "aa_start": 35122,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 109068,
          "cdna_start": 105591,
          "cds_end": null,
          "cds_length": 107820,
          "cds_start": 105365,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 361,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000446966.2",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.105365_105366delGCinsCT",
          "hgvs_p": "p.Arg35122Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000408004.2",
          "strand": false,
          "transcript": "ENST00000446966.2",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 35899,
          "aa_ref": "R",
          "aa_start": 35082,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 108948,
          "cdna_start": 105471,
          "cds_end": null,
          "cds_length": 107700,
          "cds_start": 105245,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 361,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000436599.2",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.105245_105246delGCinsCT",
          "hgvs_p": "p.Arg35082Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000405517.2",
          "strand": false,
          "transcript": "ENST00000436599.2",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 35805,
          "aa_ref": "R",
          "aa_start": 34988,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 108666,
          "cdna_start": 105189,
          "cds_end": null,
          "cds_length": 107418,
          "cds_start": 104963,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 356,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000426232.6",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.104963_104964delGCinsCT",
          "hgvs_p": "p.Arg34988Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000392336.2",
          "strand": false,
          "transcript": "ENST00000426232.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4592,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000419746.5",
          "gene_hgnc_id": 44124,
          "gene_symbol": "TTN-AS1",
          "hgvs_c": "n.220-4639_220-4638delGCinsAG",
          "hgvs_p": null,
          "intron_rank": 2,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000419746.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 35991,
          "aa_ref": "R",
          "aa_start": 35174,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 109488,
          "cdna_start": 106011,
          "cds_end": null,
          "cds_length": 107976,
          "cds_start": 105521,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 365,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000412264.2",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.105521_105522delGCinsCT",
          "hgvs_p": "p.Arg35174Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000394672.2",
          "strand": false,
          "transcript": "ENST00000412264.2",
          "transcript_support_level": 3
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 35963,
          "aa_ref": "R",
          "aa_start": 35146,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 109140,
          "cdna_start": 105663,
          "cds_end": null,
          "cds_length": 107892,
          "cds_start": 105437,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 362,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000425332.3",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.105437_105438delGCinsCT",
          "hgvs_p": "p.Arg35146Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000396805.3",
          "strand": false,
          "transcript": "ENST00000425332.3",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 35853,
          "aa_ref": "R",
          "aa_start": 35036,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 108810,
          "cdna_start": 105333,
          "cds_end": null,
          "cds_length": 107562,
          "cds_start": 105107,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 360,
          "exon_rank": null,
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          "feature": "ENST00000715174.1",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.105107_105108delGCinsCT",
          "hgvs_p": "p.Arg35036Pro",
          "intron_rank": null,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000520370.1",
          "strand": false,
          "transcript": "ENST00000715174.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 34350,
          "aa_ref": "R",
          "aa_start": 33533,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 104301,
          "cdna_start": 100824,
          "cds_end": null,
          "cds_length": 103053,
          "cds_start": 100598,
          "consequences": [
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          ],
          "exon_count": 313,
          "exon_rank": null,
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          "feature": "NM_001256850.1",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
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          "hgvs_p": "p.Arg33533Pro",
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001243779.1",
          "strand": false,
          "transcript": "NM_001256850.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
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          "aa_length": 34350,
          "aa_ref": "R",
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 104301,
          "cdna_start": 100824,
          "cds_end": null,
          "cds_length": 103053,
          "cds_start": 100598,
          "consequences": [
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          ],
          "exon_count": 313,
          "exon_rank": null,
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          "feature": "ENST00000591111.5",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
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          "intron_rank": null,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000465570.1",
          "strand": false,
          "transcript": "ENST00000591111.5",
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        },
        {
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          "aa_length": 33423,
          "aa_ref": "R",
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          "biotype": "protein_coding",
          "canonical": false,
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          "cdna_length": 101520,
          "cdna_start": 98043,
          "cds_end": null,
          "cds_length": 100272,
          "cds_start": 97817,
          "consequences": [
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          ],
          "exon_count": 312,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_133378.4",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.97817_97818delGCinsCT",
          "hgvs_p": "p.Arg32606Pro",
          "intron_rank": null,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_596869.4",
          "strand": false,
          "transcript": "NM_133378.4",
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        },
        {
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          "aa_ref": "R",
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          "biotype": "protein_coding",
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          "consequences": [
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          ],
          "exon_count": 312,
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          "feature": "ENST00000342992.11",
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          "mane_plus": null,
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          "protein_coding": true,
          "protein_id": "ENSP00000343764.6",
          "strand": false,
          "transcript": "ENST00000342992.11",
          "transcript_support_level": 5
        },
        {
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          "aa_length": 27118,
          "aa_ref": "R",
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          "biotype": "protein_coding",
          "canonical": false,
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          "cdna_length": 82605,
          "cdna_start": 79128,
          "cds_end": null,
          "cds_length": 81357,
          "cds_start": 78902,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 192,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_133437.4",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.78902_78903delGCinsCT",
          "hgvs_p": "p.Arg26301Pro",
          "intron_rank": null,
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          "mane_plus": null,
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          "protein_coding": true,
          "protein_id": "NP_597681.4",
          "strand": false,
          "transcript": "NM_133437.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
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          "aa_length": 27118,
          "aa_ref": "R",
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          "biotype": "protein_coding",
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          "cdna_length": 82380,
          "cdna_start": 78903,
          "cds_end": null,
          "cds_length": 81357,
          "cds_start": 78902,
          "consequences": [
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          ],
          "exon_count": 191,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000342175.12",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.78902_78903delGCinsCT",
          "hgvs_p": "p.Arg26301Pro",
          "intron_rank": null,
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          "mane_plus": null,
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          "protein_coding": true,
          "protein_id": "ENSP00000340554.6",
          "strand": false,
          "transcript": "ENST00000342175.12",
          "transcript_support_level": 5
        },
        {
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          "aa_length": 27051,
          "aa_ref": "R",
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          "cdna_start": 78927,
          "cds_end": null,
          "cds_length": 81156,
          "cds_start": 78701,
          "consequences": [
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          ],
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          "exon_rank": null,
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          "feature": "NM_133432.3",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.78701_78702delGCinsCT",
          "hgvs_p": "p.Arg26234Pro",
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_597676.3",
          "strand": false,
          "transcript": "NM_133432.3",
          "transcript_support_level": null
        },
        {
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          "aa_ref": "R",
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          "biotype": "protein_coding",
          "canonical": false,
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          "cdna_length": 82179,
          "cdna_start": 78702,
          "cds_end": null,
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          "consequences": [
            "missense_variant"
          ],
          "exon_count": 191,
          "exon_rank": null,
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          "feature": "ENST00000359218.11",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.78701_78702delGCinsCT",
          "hgvs_p": "p.Arg26234Pro",
          "intron_rank": null,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000352154.5",
          "strand": false,
          "transcript": "ENST00000359218.11",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "P",
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          "aa_length": 26926,
          "aa_ref": "R",
          "aa_start": 26109,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 82029,
          "cdna_start": 78552,
          "cds_end": null,
          "cds_length": 80781,
          "cds_start": 78326,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 191,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_003319.4",
          "gene_hgnc_id": 12403,
          "gene_symbol": "TTN",
          "hgvs_c": "c.78326_78327delGCinsCT",
          "hgvs_p": "p.Arg26109Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_003310.4",
          "strand": false,
          "transcript": "NM_003319.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 26926,
          "aa_ref": "R",
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.