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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-178564615-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=178564615&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 178564615,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001267550.2",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 326,
          "exon_rank_end": null,
          "exon_count": 363,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.81517C>G",
          "hgvs_p": "p.Pro27173Ala",
          "transcript": "NM_001267550.2",
          "protein_id": "NP_001254479.2",
          "transcript_support_level": null,
          "aa_start": 27173,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 81517,
          "cds_end": null,
          "cds_length": 107976,
          "cdna_start": 81742,
          "cdna_end": null,
          "cdna_length": 109224,
          "mane_select": "ENST00000589042.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001267550.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 326,
          "exon_rank_end": null,
          "exon_count": 363,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.81517C>G",
          "hgvs_p": "p.Pro27173Ala",
          "transcript": "ENST00000589042.5",
          "protein_id": "ENSP00000467141.1",
          "transcript_support_level": 5,
          "aa_start": 27173,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 81517,
          "cds_end": null,
          "cds_length": 107976,
          "cdna_start": 81742,
          "cdna_end": null,
          "cdna_length": 109224,
          "mane_select": "NM_001267550.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000589042.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 324,
          "exon_rank_end": null,
          "exon_count": 361,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.81361C>G",
          "hgvs_p": "p.Pro27121Ala",
          "transcript": "ENST00000446966.2",
          "protein_id": "ENSP00000408004.2",
          "transcript_support_level": 1,
          "aa_start": 27121,
          "aa_end": null,
          "aa_length": 35939,
          "cds_start": 81361,
          "cds_end": null,
          "cds_length": 107820,
          "cdna_start": 81586,
          "cdna_end": null,
          "cdna_length": 109068,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000446966.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 324,
          "exon_rank_end": null,
          "exon_count": 361,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.81241C>G",
          "hgvs_p": "p.Pro27081Ala",
          "transcript": "ENST00000436599.2",
          "protein_id": "ENSP00000405517.2",
          "transcript_support_level": 1,
          "aa_start": 27081,
          "aa_end": null,
          "aa_length": 35899,
          "cds_start": 81241,
          "cds_end": null,
          "cds_length": 107700,
          "cdna_start": 81466,
          "cdna_end": null,
          "cdna_length": 108948,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000436599.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 319,
          "exon_rank_end": null,
          "exon_count": 356,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.80959C>G",
          "hgvs_p": "p.Pro26987Ala",
          "transcript": "ENST00000426232.6",
          "protein_id": "ENSP00000392336.2",
          "transcript_support_level": 1,
          "aa_start": 26987,
          "aa_end": null,
          "aa_length": 35805,
          "cds_start": 80959,
          "cds_end": null,
          "cds_length": 107418,
          "cdna_start": 81184,
          "cdna_end": null,
          "cdna_length": 108666,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000426232.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "TTN-AS1",
          "gene_hgnc_id": 44124,
          "hgvs_c": "n.2044-17957G>C",
          "hgvs_p": null,
          "transcript": "ENST00000419746.5",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4592,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000419746.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 328,
          "exon_rank_end": null,
          "exon_count": 365,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.81517C>G",
          "hgvs_p": "p.Pro27173Ala",
          "transcript": "ENST00000412264.2",
          "protein_id": "ENSP00000394672.2",
          "transcript_support_level": 3,
          "aa_start": 27173,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 81517,
          "cds_end": null,
          "cds_length": 107976,
          "cdna_start": 82006,
          "cdna_end": null,
          "cdna_length": 109488,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000412264.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 325,
          "exon_rank_end": null,
          "exon_count": 362,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.81433C>G",
          "hgvs_p": "p.Pro27145Ala",
          "transcript": "ENST00000425332.3",
          "protein_id": "ENSP00000396805.3",
          "transcript_support_level": 5,
          "aa_start": 27145,
          "aa_end": null,
          "aa_length": 35963,
          "cds_start": 81433,
          "cds_end": null,
          "cds_length": 107892,
          "cdna_start": 81658,
          "cdna_end": null,
          "cdna_length": 109140,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000425332.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 323,
          "exon_rank_end": null,
          "exon_count": 360,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.81103C>G",
          "hgvs_p": "p.Pro27035Ala",
          "transcript": "ENST00000715174.1",
          "protein_id": "ENSP00000520370.1",
          "transcript_support_level": null,
          "aa_start": 27035,
          "aa_end": null,
          "aa_length": 35853,
          "cds_start": 81103,
          "cds_end": null,
          "cds_length": 107562,
          "cdna_start": 81328,
          "cdna_end": null,
          "cdna_length": 108810,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000715174.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 276,
          "exon_rank_end": null,
          "exon_count": 313,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.76594C>G",
          "hgvs_p": "p.Pro25532Ala",
          "transcript": "NM_001256850.1",
          "protein_id": "NP_001243779.1",
          "transcript_support_level": null,
          "aa_start": 25532,
          "aa_end": null,
          "aa_length": 34350,
          "cds_start": 76594,
          "cds_end": null,
          "cds_length": 103053,
          "cdna_start": 76819,
          "cdna_end": null,
          "cdna_length": 104301,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001256850.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 276,
          "exon_rank_end": null,
          "exon_count": 313,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.76594C>G",
          "hgvs_p": "p.Pro25532Ala",
          "transcript": "ENST00000591111.5",
          "protein_id": "ENSP00000465570.1",
          "transcript_support_level": 5,
          "aa_start": 25532,
          "aa_end": null,
          "aa_length": 34350,
          "cds_start": 76594,
          "cds_end": null,
          "cds_length": 103053,
          "cdna_start": 76819,
          "cdna_end": null,
          "cdna_length": 104301,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000591111.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 275,
          "exon_rank_end": null,
          "exon_count": 312,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.73813C>G",
          "hgvs_p": "p.Pro24605Ala",
          "transcript": "NM_133378.4",
          "protein_id": "NP_596869.4",
          "transcript_support_level": null,
          "aa_start": 24605,
          "aa_end": null,
          "aa_length": 33423,
          "cds_start": 73813,
          "cds_end": null,
          "cds_length": 100272,
          "cdna_start": 74038,
          "cdna_end": null,
          "cdna_length": 101520,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_133378.4"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 275,
          "exon_rank_end": null,
          "exon_count": 312,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.73813C>G",
          "hgvs_p": "p.Pro24605Ala",
          "transcript": "ENST00000342992.11",
          "protein_id": "ENSP00000343764.6",
          "transcript_support_level": 5,
          "aa_start": 24605,
          "aa_end": null,
          "aa_length": 33423,
          "cds_start": 73813,
          "cds_end": null,
          "cds_length": 100272,
          "cdna_start": 74038,
          "cdna_end": null,
          "cdna_length": 101520,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000342992.11"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 155,
          "exon_rank_end": null,
          "exon_count": 192,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.54898C>G",
          "hgvs_p": "p.Pro18300Ala",
          "transcript": "NM_133437.4",
          "protein_id": "NP_597681.4",
          "transcript_support_level": null,
          "aa_start": 18300,
          "aa_end": null,
          "aa_length": 27118,
          "cds_start": 54898,
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          "cds_length": 81357,
          "cdna_start": 55123,
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          "cdna_length": 82605,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_133437.4"
        },
        {
          "aa_ref": "P",
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          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 154,
          "exon_rank_end": null,
          "exon_count": 191,
          "intron_rank": null,
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          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.54898C>G",
          "hgvs_p": "p.Pro18300Ala",
          "transcript": "ENST00000342175.12",
          "protein_id": "ENSP00000340554.6",
          "transcript_support_level": 5,
          "aa_start": 18300,
          "aa_end": null,
          "aa_length": 27118,
          "cds_start": 54898,
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          "cds_length": 81357,
          "cdna_start": 54898,
          "cdna_end": null,
          "cdna_length": 82380,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000342175.12"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 155,
          "exon_rank_end": null,
          "exon_count": 192,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.54697C>G",
          "hgvs_p": "p.Pro18233Ala",
          "transcript": "NM_133432.3",
          "protein_id": "NP_597676.3",
          "transcript_support_level": null,
          "aa_start": 18233,
          "aa_end": null,
          "aa_length": 27051,
          "cds_start": 54697,
          "cds_end": null,
          "cds_length": 81156,
          "cdna_start": 54922,
          "cdna_end": null,
          "cdna_length": 82404,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_133432.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 154,
          "exon_rank_end": null,
          "exon_count": 191,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.54697C>G",
          "hgvs_p": "p.Pro18233Ala",
          "transcript": "ENST00000359218.11",
          "protein_id": "ENSP00000352154.5",
          "transcript_support_level": 5,
          "aa_start": 18233,
          "aa_end": null,
          "aa_length": 27051,
          "cds_start": 54697,
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          "cdna_length": 82179,
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          "biotype": "protein_coding",
          "feature": "ENST00000359218.11"
        },
        {
          "aa_ref": "P",
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          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 154,
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          "exon_count": 191,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.54322C>G",
          "hgvs_p": "p.Pro18108Ala",
          "transcript": "NM_003319.4",
          "protein_id": "NP_003310.4",
          "transcript_support_level": null,
          "aa_start": 18108,
          "aa_end": null,
          "aa_length": 26926,
          "cds_start": 54322,
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          "cdna_start": 54547,
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          "cdna_length": 82029,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_003319.4"
        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 154,
          "exon_rank_end": null,
          "exon_count": 191,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.54322C>G",
          "hgvs_p": "p.Pro18108Ala",
          "transcript": "ENST00000460472.6",
          "protein_id": "ENSP00000434586.1",
          "transcript_support_level": 5,
          "aa_start": 18108,
          "aa_end": null,
          "aa_length": 26926,
          "cds_start": 54322,
          "cds_end": null,
          "cds_length": 80781,
          "cdna_start": 54547,
          "cdna_end": null,
          "cdna_length": 82029,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000460472.6"
        },
        {
          "aa_ref": "P",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 322,
          "exon_rank_end": null,
          "exon_count": 359,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.80410C>G",
          "hgvs_p": "p.Pro26804Ala",
          "transcript": "XM_017004819.1",
          "protein_id": "XP_016860308.1",
          "transcript_support_level": null,
          "aa_start": 26804,
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      "computational_score_selected": 0.16163498163223267,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.32,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 8.066,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "acmg_score": -3,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Moderate,BP6",
      "acmg_by_gene": [
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            "BP6"
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          "verdict": "Likely_benign",
          "transcript": "NM_001267550.2",
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          "criteria": [
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            "BP4_Moderate",
            "BP6",
            "BS1"
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          "transcript": "ENST00000419746.5",
          "gene_symbol": "TTN-AS1",
          "hgnc_id": 44124,
          "effects": [
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          "inheritance_mode": "",
          "hgvs_c": "n.2044-17957G>C",
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      ],
      "clinvar_disease": "Autosomal recessive limb-girdle muscular dystrophy type 2J,Cardiovascular phenotype,Dilated cardiomyopathy 1G,not specified",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:3 LB:1",
      "phenotype_combined": "Dilated cardiomyopathy 1G;Autosomal recessive limb-girdle muscular dystrophy type 2J|Cardiovascular phenotype|not specified",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}
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