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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-178608347-GTTAACT-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=178608347&ref=GTTAACT&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 178608347,
      "ref": "GTTAACT",
      "alt": "G",
      "effect": "disruptive_inframe_deletion",
      "transcript": "ENST00000589042.5",
      "consequences": [
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 275,
          "exon_rank_end": null,
          "exon_count": 363,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.52530_52535delAGTTAA",
          "hgvs_p": "p.Glu17510_Asn17512delinsAsp",
          "transcript": "NM_001267550.2",
          "protein_id": "NP_001254479.2",
          "transcript_support_level": null,
          "aa_start": 17510,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 52530,
          "cds_end": null,
          "cds_length": 107976,
          "cdna_start": 52760,
          "cdna_end": null,
          "cdna_length": 109224,
          "mane_select": "ENST00000589042.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 275,
          "exon_rank_end": null,
          "exon_count": 363,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.52530_52535delAGTTAA",
          "hgvs_p": "p.Glu17510_Asn17512delinsAsp",
          "transcript": "ENST00000589042.5",
          "protein_id": "ENSP00000467141.1",
          "transcript_support_level": 5,
          "aa_start": 17510,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 52530,
          "cds_end": null,
          "cds_length": 107976,
          "cdna_start": 52760,
          "cdna_end": null,
          "cdna_length": 109224,
          "mane_select": "NM_001267550.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 273,
          "exon_rank_end": null,
          "exon_count": 361,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.52374_52379delAGTTAA",
          "hgvs_p": "p.Glu17458_Asn17460delinsAsp",
          "transcript": "ENST00000446966.2",
          "protein_id": "ENSP00000408004.2",
          "transcript_support_level": 1,
          "aa_start": 17458,
          "aa_end": null,
          "aa_length": 35939,
          "cds_start": 52374,
          "cds_end": null,
          "cds_length": 107820,
          "cdna_start": 52604,
          "cdna_end": null,
          "cdna_length": 109068,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 273,
          "exon_rank_end": null,
          "exon_count": 361,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.52254_52259delAGTTAA",
          "hgvs_p": "p.Glu17418_Asn17420delinsAsp",
          "transcript": "ENST00000436599.2",
          "protein_id": "ENSP00000405517.2",
          "transcript_support_level": 1,
          "aa_start": 17418,
          "aa_end": null,
          "aa_length": 35899,
          "cds_start": 52254,
          "cds_end": null,
          "cds_length": 107700,
          "cdna_start": 52484,
          "cdna_end": null,
          "cdna_length": 108948,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 268,
          "exon_rank_end": null,
          "exon_count": 356,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.51972_51977delAGTTAA",
          "hgvs_p": "p.Glu17324_Asn17326delinsAsp",
          "transcript": "ENST00000426232.6",
          "protein_id": "ENSP00000392336.2",
          "transcript_support_level": 1,
          "aa_start": 17324,
          "aa_end": null,
          "aa_length": 35805,
          "cds_start": 51972,
          "cds_end": null,
          "cds_length": 107418,
          "cdna_start": 52202,
          "cdna_end": null,
          "cdna_length": 108666,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 277,
          "exon_rank_end": null,
          "exon_count": 365,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.52530_52535delAGTTAA",
          "hgvs_p": "p.Glu17510_Asn17512delinsAsp",
          "transcript": "ENST00000412264.2",
          "protein_id": "ENSP00000394672.2",
          "transcript_support_level": 3,
          "aa_start": 17510,
          "aa_end": null,
          "aa_length": 35991,
          "cds_start": 52530,
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          "cds_length": 107976,
          "cdna_start": 53024,
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          "cdna_length": 109488,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 274,
          "exon_rank_end": null,
          "exon_count": 362,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.52446_52451delAGTTAA",
          "hgvs_p": "p.Glu17482_Asn17484delinsAsp",
          "transcript": "ENST00000425332.3",
          "protein_id": "ENSP00000396805.3",
          "transcript_support_level": 5,
          "aa_start": 17482,
          "aa_end": null,
          "aa_length": 35963,
          "cds_start": 52446,
          "cds_end": null,
          "cds_length": 107892,
          "cdna_start": 52676,
          "cdna_end": null,
          "cdna_length": 109140,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 272,
          "exon_rank_end": null,
          "exon_count": 360,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.52116_52121delAGTTAA",
          "hgvs_p": "p.Glu17372_Asn17374delinsAsp",
          "transcript": "ENST00000715174.1",
          "protein_id": "ENSP00000520370.1",
          "transcript_support_level": null,
          "aa_start": 17372,
          "aa_end": null,
          "aa_length": 35853,
          "cds_start": 52116,
          "cds_end": null,
          "cds_length": 107562,
          "cdna_start": 52346,
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          "mane_select": null,
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        },
        {
          "aa_ref": "EVN",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 225,
          "exon_rank_end": null,
          "exon_count": 313,
          "intron_rank": null,
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          "gene_symbol": "TTN",
          "gene_hgnc_id": 12403,
          "hgvs_c": "c.47607_47612delAGTTAA",
          "hgvs_p": "p.Glu15869_Asn15871delinsAsp",
          "transcript": "NM_001256850.1",
          "protein_id": "NP_001243779.1",
          "transcript_support_level": null,
          "aa_start": 15869,
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          "cds_start": 47607,
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          "cdna_start": 47837,
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          "mane_select": null,
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        },
        {
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          "consequences": [
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          "exon_rank": 225,
          "exon_rank_end": null,
          "exon_count": 313,
          "intron_rank": null,
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          "gene_symbol": "TTN",
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          "hgvs_c": "c.47607_47612delAGTTAA",
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          "transcript": "ENST00000591111.5",
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        {
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          "consequences": [
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          "exon_rank": 224,
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          "exon_count": 312,
          "intron_rank": null,
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          "gene_symbol": "TTN",
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          "hgvs_c": "c.44826_44831delAGTTAA",
          "hgvs_p": "p.Glu14942_Asn14944delinsAsp",
          "transcript": "NM_133378.4",
          "protein_id": "NP_596869.4",
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          "hgvs_c": "c.44826_44831delAGTTAA",
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          "hgvs_c": "c.25911_25916delAGTTAA",
          "hgvs_p": "p.Glu8637_Asn8639delinsAsp",
          "transcript": "NM_133437.4",
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        {
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          "hgvs_c": "c.51423_51428delAGTTAA",
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          "transcript": "XM_017004819.1",
          "protein_id": "XP_016860308.1",
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        },
        {
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          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "TTN-AS1",
          "gene_hgnc_id": 44124,
          "hgvs_c": "n.686+10668_686+10673delTAACTT",
          "hgvs_p": null,
          "transcript": "ENST00000768384.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 741,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "TTN-AS1",
          "gene_hgnc_id": 44124,
          "hgvs_c": "n.782+83_782+88delTAACTT",
          "hgvs_p": null,
          "transcript": "NR_038271.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2069,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "TTN",
      "gene_hgnc_id": 12403,
      "dbsnp": "rs1553688489",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": null,
      "splice_prediction_selected": null,
      "splice_source_selected": null,
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 7.969,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": null,
      "spliceai_max_prediction": null,
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 5,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PM4,PP3",
      "acmg_by_gene": [
        {
          "score": 5,
          "benign_score": 0,
          "pathogenic_score": 5,
          "criteria": [
            "PM2",
            "PM4",
            "PP3"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000589042.5",
          "gene_symbol": "TTN",
          "hgnc_id": 12403,
          "effects": [
            "disruptive_inframe_deletion"
          ],
          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.52530_52535delAGTTAA",
          "hgvs_p": "p.Glu17510_Asn17512delinsAsp"
        },
        {
          "score": 3,
          "benign_score": 0,
          "pathogenic_score": 3,
          "criteria": [
            "PM2",
            "PP3"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000456053.5",
          "gene_symbol": "TTN-AS1",
          "hgnc_id": 44124,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.749+83_749+88delTAACTT",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Autosomal recessive limb-girdle muscular dystrophy type 2J,Dilated cardiomyopathy 1G",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "Dilated cardiomyopathy 1G;Autosomal recessive limb-girdle muscular dystrophy type 2J",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}