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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-178610148-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=178610148&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 11,
"criteria": [
"BP4_Moderate",
"BP6_Very_Strong",
"BP7"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "TTN",
"hgnc_id": 12403,
"hgvs_c": "c.51378G>A",
"hgvs_p": "p.Lys17126Lys",
"inheritance_mode": "AD,AR",
"pathogenic_score": 0,
"score": -11,
"transcript": "NM_001267550.2",
"verdict": "Benign"
},
{
"benign_score": 14,
"criteria": [
"BP4_Moderate",
"BP6_Very_Strong",
"BS1"
],
"effects": [
"intron_variant"
],
"gene_symbol": "TTN-AS1",
"hgnc_id": 44124,
"hgvs_c": "n.749+1882C>T",
"hgvs_p": null,
"inheritance_mode": "",
"pathogenic_score": 0,
"score": -14,
"transcript": "ENST00000456053.5",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Moderate,BP6_Very_Strong,BP7",
"acmg_score": -11,
"allele_count_reference_population": 31,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.33,
"chr": "2",
"clinvar_classification": "Likely benign",
"clinvar_disease": "Autosomal recessive limb-girdle muscular dystrophy type 2J,Cardiovascular phenotype,Dilated cardiomyopathy 1G",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:2",
"computational_prediction_selected": "Benign",
"computational_score_selected": -0.33000001311302185,
"computational_source_selected": "BayesDel_noAF",
"consequences": [
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 35991,
"aa_ref": "K",
"aa_start": 17126,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 109224,
"cdna_start": 51603,
"cds_end": null,
"cds_length": 107976,
"cds_start": 51378,
"consequences": [
"synonymous_variant"
],
"exon_count": 363,
"exon_rank": 271,
"exon_rank_end": null,
"feature": "NM_001267550.2",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.51378G>A",
"hgvs_p": "p.Lys17126Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000589042.5",
"protein_coding": true,
"protein_id": "NP_001254479.2",
"strand": false,
"transcript": "NM_001267550.2",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 35991,
"aa_ref": "K",
"aa_start": 17126,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 109224,
"cdna_start": 51603,
"cds_end": null,
"cds_length": 107976,
"cds_start": 51378,
"consequences": [
"synonymous_variant"
],
"exon_count": 363,
"exon_rank": 271,
"exon_rank_end": null,
"feature": "ENST00000589042.5",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.51378G>A",
"hgvs_p": "p.Lys17126Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001267550.2",
"protein_coding": true,
"protein_id": "ENSP00000467141.1",
"strand": false,
"transcript": "ENST00000589042.5",
"transcript_support_level": 5
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 35939,
"aa_ref": "K",
"aa_start": 17074,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 109068,
"cdna_start": 51447,
"cds_end": null,
"cds_length": 107820,
"cds_start": 51222,
"consequences": [
"synonymous_variant"
],
"exon_count": 361,
"exon_rank": 269,
"exon_rank_end": null,
"feature": "ENST00000446966.2",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.51222G>A",
"hgvs_p": "p.Lys17074Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000408004.2",
"strand": false,
"transcript": "ENST00000446966.2",
"transcript_support_level": 1
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 35899,
"aa_ref": "K",
"aa_start": 17034,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 108948,
"cdna_start": 51327,
"cds_end": null,
"cds_length": 107700,
"cds_start": 51102,
"consequences": [
"synonymous_variant"
],
"exon_count": 361,
"exon_rank": 269,
"exon_rank_end": null,
"feature": "ENST00000436599.2",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.51102G>A",
"hgvs_p": "p.Lys17034Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000405517.2",
"strand": false,
"transcript": "ENST00000436599.2",
"transcript_support_level": 1
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 35805,
"aa_ref": "K",
"aa_start": 16940,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 108666,
"cdna_start": 51045,
"cds_end": null,
"cds_length": 107418,
"cds_start": 50820,
"consequences": [
"synonymous_variant"
],
"exon_count": 356,
"exon_rank": 264,
"exon_rank_end": null,
"feature": "ENST00000426232.6",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.50820G>A",
"hgvs_p": "p.Lys16940Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000392336.2",
"strand": false,
"transcript": "ENST00000426232.6",
"transcript_support_level": 1
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 35991,
"aa_ref": "K",
"aa_start": 17126,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 109488,
"cdna_start": 51867,
"cds_end": null,
"cds_length": 107976,
"cds_start": 51378,
"consequences": [
"synonymous_variant"
],
"exon_count": 365,
"exon_rank": 273,
"exon_rank_end": null,
"feature": "ENST00000412264.2",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.51378G>A",
"hgvs_p": "p.Lys17126Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000394672.2",
"strand": false,
"transcript": "ENST00000412264.2",
"transcript_support_level": 3
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 35963,
"aa_ref": "K",
"aa_start": 17098,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 109140,
"cdna_start": 51519,
"cds_end": null,
"cds_length": 107892,
"cds_start": 51294,
"consequences": [
"synonymous_variant"
],
"exon_count": 362,
"exon_rank": 270,
"exon_rank_end": null,
"feature": "ENST00000425332.3",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.51294G>A",
"hgvs_p": "p.Lys17098Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000396805.3",
"strand": false,
"transcript": "ENST00000425332.3",
"transcript_support_level": 5
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 35853,
"aa_ref": "K",
"aa_start": 16988,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 108810,
"cdna_start": 51189,
"cds_end": null,
"cds_length": 107562,
"cds_start": 50964,
"consequences": [
"synonymous_variant"
],
"exon_count": 360,
"exon_rank": 268,
"exon_rank_end": null,
"feature": "ENST00000715174.1",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.50964G>A",
"hgvs_p": "p.Lys16988Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000520370.1",
"strand": false,
"transcript": "ENST00000715174.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
"aa_end": null,
"aa_length": 34350,
"aa_ref": "K",
"aa_start": 15485,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 104301,
"cdna_start": 46680,
"cds_end": null,
"cds_length": 103053,
"cds_start": 46455,
"consequences": [
"synonymous_variant"
],
"exon_count": 313,
"exon_rank": 221,
"exon_rank_end": null,
"feature": "NM_001256850.1",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.46455G>A",
"hgvs_p": "p.Lys15485Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001243779.1",
"strand": false,
"transcript": "NM_001256850.1",
"transcript_support_level": null
},
{
"aa_alt": "K",
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"aa_length": 34350,
"aa_ref": "K",
"aa_start": 15485,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 104301,
"cdna_start": 46680,
"cds_end": null,
"cds_length": 103053,
"cds_start": 46455,
"consequences": [
"synonymous_variant"
],
"exon_count": 313,
"exon_rank": 221,
"exon_rank_end": null,
"feature": "ENST00000591111.5",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.46455G>A",
"hgvs_p": "p.Lys15485Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000465570.1",
"strand": false,
"transcript": "ENST00000591111.5",
"transcript_support_level": 5
},
{
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"aa_length": 33423,
"aa_ref": "K",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 101520,
"cdna_start": 43899,
"cds_end": null,
"cds_length": 100272,
"cds_start": 43674,
"consequences": [
"synonymous_variant"
],
"exon_count": 312,
"exon_rank": 220,
"exon_rank_end": null,
"feature": "NM_133378.4",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.43674G>A",
"hgvs_p": "p.Lys14558Lys",
"intron_rank": null,
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "NP_596869.4",
"strand": false,
"transcript": "NM_133378.4",
"transcript_support_level": null
},
{
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"aa_ref": "K",
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"biotype": "protein_coding",
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"cdna_start": 43899,
"cds_end": null,
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"consequences": [
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],
"exon_count": 312,
"exon_rank": 220,
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"feature": "ENST00000342992.11",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.43674G>A",
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "ENSP00000343764.6",
"strand": false,
"transcript": "ENST00000342992.11",
"transcript_support_level": 5
},
{
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"aa_length": 27118,
"aa_ref": "K",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 82605,
"cdna_start": 24984,
"cds_end": null,
"cds_length": 81357,
"cds_start": 24759,
"consequences": [
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],
"exon_count": 192,
"exon_rank": 100,
"exon_rank_end": null,
"feature": "NM_133437.4",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.24759G>A",
"hgvs_p": "p.Lys8253Lys",
"intron_rank": null,
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "NP_597681.4",
"strand": false,
"transcript": "NM_133437.4",
"transcript_support_level": null
},
{
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"consequences": [
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],
"exon_count": 191,
"exon_rank": 99,
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"feature": "ENST00000342175.12",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.24759G>A",
"hgvs_p": "p.Lys8253Lys",
"intron_rank": null,
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "ENSP00000340554.6",
"strand": false,
"transcript": "ENST00000342175.12",
"transcript_support_level": 5
},
{
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"aa_ref": "K",
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"biotype": "protein_coding",
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"cdna_length": 82404,
"cdna_start": 24783,
"cds_end": null,
"cds_length": 81156,
"cds_start": 24558,
"consequences": [
"synonymous_variant"
],
"exon_count": 192,
"exon_rank": 100,
"exon_rank_end": null,
"feature": "NM_133432.3",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.24558G>A",
"hgvs_p": "p.Lys8186Lys",
"intron_rank": null,
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "NP_597676.3",
"strand": false,
"transcript": "NM_133432.3",
"transcript_support_level": null
},
{
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"aa_ref": "K",
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"cdna_start": 24558,
"cds_end": null,
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"consequences": [
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],
"exon_count": 191,
"exon_rank": 99,
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"feature": "ENST00000359218.11",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.24558G>A",
"hgvs_p": "p.Lys8186Lys",
"intron_rank": null,
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"protein_coding": true,
"protein_id": "ENSP00000352154.5",
"strand": false,
"transcript": "ENST00000359218.11",
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},
{
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"consequences": [
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],
"exon_count": 191,
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"feature": "NM_003319.4",
"gene_hgnc_id": 12403,
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"hgvs_c": "c.24183G>A",
"hgvs_p": "p.Lys8061Lys",
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"protein_coding": true,
"protein_id": "NP_003310.4",
"strand": false,
"transcript": "NM_003319.4",
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},
{
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"cds_end": null,
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"cds_start": 24183,
"consequences": [
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],
"exon_count": 191,
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"feature": "ENST00000460472.6",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.24183G>A",
"hgvs_p": "p.Lys8061Lys",
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "ENSP00000434586.1",
"strand": false,
"transcript": "ENST00000460472.6",
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},
{
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"aa_ref": "K",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 108117,
"cdna_start": 50496,
"cds_end": null,
"cds_length": 106869,
"cds_start": 50271,
"consequences": [
"synonymous_variant"
],
"exon_count": 359,
"exon_rank": 267,
"exon_rank_end": null,
"feature": "XM_017004819.1",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.50271G>A",
"hgvs_p": "p.Lys16757Lys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_016860308.1",
"strand": false,
"transcript": "XM_017004819.1",
"transcript_support_level": null
},
{
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"aa_ref": "K",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 104229,
"cdna_start": 46608,
"cds_end": null,
"cds_length": 102981,
"cds_start": 46383,
"consequences": [
"synonymous_variant"
],
"exon_count": 317,
"exon_rank": 225,
"exon_rank_end": null,
"feature": "XM_047445660.1",
"gene_hgnc_id": 12403,
"gene_symbol": "TTN",
"hgvs_c": "c.46383G>A",
"hgvs_p": "p.Lys15461Lys",
"intron_rank": null,
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"mane_plus": null,
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