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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-17931939-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=17931939&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PP3_Moderate"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "KCNS3",
          "hgnc_id": 6302,
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "inheritance_mode": "AR",
          "pathogenic_score": 2,
          "score": 2,
          "transcript": "NM_002252.5",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PP3_Moderate",
      "acmg_score": 2,
      "allele_count_reference_population": 199,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.8406,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.53,
      "chr": "2",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not specified",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Pathogenic",
      "computational_score_selected": 0.8868832588195801,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2341,
          "cdna_start": 1322,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_002252.5",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000304101.9",
          "protein_coding": true,
          "protein_id": "NP_002243.3",
          "strand": true,
          "transcript": "NM_002252.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2341,
          "cdna_start": 1322,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000304101.9",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_002252.5",
          "protein_coding": true,
          "protein_id": "ENSP00000305824.4",
          "strand": true,
          "transcript": "ENST00000304101.9",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2397,
          "cdna_start": 1382,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000403915.5",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000385968.1",
          "strand": true,
          "transcript": "ENST00000403915.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2401,
          "cdna_start": 1382,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001282428.2",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001269357.1",
          "strand": true,
          "transcript": "NM_001282428.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2187,
          "cdna_start": 1165,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000869571.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539630.1",
          "strand": true,
          "transcript": "ENST00000869571.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3341,
          "cdna_start": 2322,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000869572.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539631.1",
          "strand": true,
          "transcript": "ENST00000869572.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2361,
          "cdna_start": 1342,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000869573.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539632.1",
          "strand": true,
          "transcript": "ENST00000869573.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2489,
          "cdna_start": 1470,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000869574.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539633.1",
          "strand": true,
          "transcript": "ENST00000869574.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2248,
          "cdna_start": 1232,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000869575.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539634.1",
          "strand": true,
          "transcript": "ENST00000869575.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2716,
          "cdna_start": 1697,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000869576.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539635.1",
          "strand": true,
          "transcript": "ENST00000869576.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2909,
          "cdna_start": 1890,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000869577.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539636.1",
          "strand": true,
          "transcript": "ENST00000869577.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2561,
          "cdna_start": 1543,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000920631.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000590690.1",
          "strand": true,
          "transcript": "ENST00000920631.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2656,
          "cdna_start": 1637,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000920632.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000590691.1",
          "strand": true,
          "transcript": "ENST00000920632.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2884,
          "cdna_start": 1862,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000920633.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000590692.1",
          "strand": true,
          "transcript": "ENST00000920633.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2309,
          "cdna_start": 1294,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000920634.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000590693.1",
          "strand": true,
          "transcript": "ENST00000920634.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2554,
          "cdna_start": 1804,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000920635.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
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          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000590694.1",
          "strand": true,
          "transcript": "ENST00000920635.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3252,
          "cdna_start": 1083,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000954193.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000624252.1",
          "strand": true,
          "transcript": "ENST00000954193.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2530,
          "cdna_start": 1512,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000954194.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000624253.1",
          "strand": true,
          "transcript": "ENST00000954194.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "W",
          "aa_end": null,
          "aa_length": 491,
          "aa_ref": "R",
          "aa_start": 311,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2494,
          "cdna_start": 1475,
          "cds_end": null,
          "cds_length": 1476,
          "cds_start": 931,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000954195.1",
          "gene_hgnc_id": 6302,
          "gene_symbol": "KCNS3",
          "hgvs_c": "c.931C>T",
          "hgvs_p": "p.Arg311Trp",
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.