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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-181928257-TAT-AAC (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=181928257&ref=TAT&alt=AAC&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "ITPRID2",
          "hgnc_id": 11319,
          "hgvs_c": "c.3772_3774delTATinsAAC",
          "hgvs_p": "p.Tyr1258Asn",
          "inheritance_mode": "AR",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "NM_001130445.3",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "",
      "acmg_score": 0,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "AAC",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "2",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 1259,
          "aa_ref": "Y",
          "aa_start": 1258,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5308,
          "cdna_start": 4109,
          "cds_end": null,
          "cds_length": 3780,
          "cds_start": 3772,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 18,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001130445.3",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3772_3774delTATinsAAC",
          "hgvs_p": "p.Tyr1258Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000431877.7",
          "protein_coding": true,
          "protein_id": "NP_001123917.1",
          "strand": true,
          "transcript": "NM_001130445.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 1259,
          "aa_ref": "Y",
          "aa_start": 1258,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 5308,
          "cdna_start": 4109,
          "cds_end": null,
          "cds_length": 3780,
          "cds_start": 3772,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 18,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000431877.7",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3772_3774delTATinsAAC",
          "hgvs_p": "p.Tyr1258Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001130445.3",
          "protein_coding": true,
          "protein_id": "ENSP00000388731.2",
          "strand": true,
          "transcript": "ENST00000431877.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 1237,
          "aa_ref": "Y",
          "aa_start": 1236,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4987,
          "cdna_start": 3788,
          "cds_end": null,
          "cds_length": 3714,
          "cds_start": 3706,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000409001.5",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3706_3708delTATinsAAC",
          "hgvs_p": "p.Tyr1236Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000387319.1",
          "strand": true,
          "transcript": "ENST00000409001.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 1256,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4965,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 3771,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000320370.11",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3676-1304_3676-1302delTATinsAAC",
          "hgvs_p": null,
          "intron_rank": 16,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000314669.7",
          "strand": true,
          "transcript": "ENST00000320370.11",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5067,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 17,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000416081.5",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "n.*3309_*3311delTATinsAAC",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000415625.1",
          "strand": true,
          "transcript": "ENST00000416081.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5067,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 17,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000416081.5",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "n.*3309_*3311delTATinsAAC",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000415625.1",
          "strand": true,
          "transcript": "ENST00000416081.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 1237,
          "aa_ref": "Y",
          "aa_start": 1236,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5242,
          "cdna_start": 4043,
          "cds_end": null,
          "cds_length": 3714,
          "cds_start": 3706,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001287503.2",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3706_3708delTATinsAAC",
          "hgvs_p": "p.Tyr1236Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001274432.1",
          "strand": true,
          "transcript": "NM_001287503.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 1084,
          "aa_ref": "Y",
          "aa_start": 1083,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5192,
          "cdna_start": 3993,
          "cds_end": null,
          "cds_length": 3255,
          "cds_start": 3247,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001287504.2",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3247_3249delTATinsAAC",
          "hgvs_p": "p.Tyr1083Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001274433.1",
          "strand": true,
          "transcript": "NM_001287504.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 768,
          "aa_ref": "Y",
          "aa_start": 767,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3610,
          "cdna_start": 2411,
          "cds_end": null,
          "cds_length": 2307,
          "cds_start": 2299,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000409136.5",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.2299_2301delTATinsAAC",
          "hgvs_p": "p.Tyr767Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000386916.1",
          "strand": true,
          "transcript": "ENST00000409136.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 1255,
          "aa_ref": "Y",
          "aa_start": 1254,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4118,
          "cdna_start": 4097,
          "cds_end": null,
          "cds_length": 3768,
          "cds_start": 3760,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_047445596.1",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3760_3762delTATinsAAC",
          "hgvs_p": "p.Tyr1254Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047301552.1",
          "strand": true,
          "transcript": "XM_047445596.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "Y",
          "aa_start": 1105,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3558,
          "cdna_start": 3537,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 3313,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_047445597.1",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3313_3315delTATinsAAC",
          "hgvs_p": "p.Tyr1105Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047301553.1",
          "strand": true,
          "transcript": "XM_047445597.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 768,
          "aa_ref": "Y",
          "aa_start": 767,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2938,
          "cdna_start": 2917,
          "cds_end": null,
          "cds_length": 2307,
          "cds_start": 2299,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_011511702.4",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.2299_2301delTATinsAAC",
          "hgvs_p": "p.Tyr767Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_011510004.1",
          "strand": true,
          "transcript": "XM_011511702.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 727,
          "aa_ref": "Y",
          "aa_start": 726,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2393,
          "cdna_start": 2372,
          "cds_end": null,
          "cds_length": 2184,
          "cds_start": 2176,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_047445599.1",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.2176_2178delTATinsAAC",
          "hgvs_p": "p.Tyr726Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047301555.1",
          "strand": true,
          "transcript": "XM_047445599.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 1256,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5190,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 3771,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_006751.7",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3676-1304_3676-1302delTATinsAAC",
          "hgvs_p": null,
          "intron_rank": 16,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_006742.2",
          "strand": true,
          "transcript": "NM_006751.7",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 201,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 747,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 606,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 3,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000451836.1",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.511-1304_511-1302delTATinsAAC",
          "hgvs_p": null,
          "intron_rank": 2,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000387420.1",
          "strand": true,
          "transcript": "ENST00000451836.1",
          "transcript_support_level": 3
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 1252,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5178,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 3759,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_005246813.3",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3664-1304_3664-1302delTATinsAAC",
          "hgvs_p": null,
          "intron_rank": 16,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_005246870.1",
          "strand": true,
          "transcript": "XM_005246813.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 1234,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5124,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 3705,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "XM_017004782.3",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "c.3610-1304_3610-1302delTATinsAAC",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_016860271.1",
          "strand": true,
          "transcript": "XM_017004782.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5420,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 18,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000440623.5",
          "gene_hgnc_id": 11319,
          "gene_symbol": "ITPRID2",
          "hgvs_c": "n.*3887_*3889delTATinsAAC",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000403754.1",
          "strand": true,
          "transcript": "ENST00000440623.5",
          "transcript_support_level": 2
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3772,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 16,
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.