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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-201285237-CTG-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=201285237&ref=CTG&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 201285237,
      "ref": "CTG",
      "alt": "C",
      "effect": "frameshift_variant",
      "transcript": "ENST00000673742.1",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1228_1229delGT",
          "hgvs_p": "p.Val410fs",
          "transcript": "NM_001372051.1",
          "protein_id": "NP_001358980.1",
          "transcript_support_level": null,
          "aa_start": 410,
          "aa_end": null,
          "aa_length": 479,
          "cds_start": 1228,
          "cds_end": null,
          "cds_length": 1440,
          "cdna_start": 1332,
          "cdna_end": null,
          "cdna_length": 2659,
          "mane_select": "ENST00000673742.1",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1228_1229delGT",
          "hgvs_p": "p.Val410fs",
          "transcript": "ENST00000673742.1",
          "protein_id": "ENSP00000501268.1",
          "transcript_support_level": null,
          "aa_start": 410,
          "aa_end": null,
          "aa_length": 479,
          "cds_start": 1228,
          "cds_end": null,
          "cds_length": 1440,
          "cdna_start": 1332,
          "cdna_end": null,
          "cdna_length": 2659,
          "mane_select": "NM_001372051.1",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1405_1406delGT",
          "hgvs_p": "p.Val469fs",
          "transcript": "ENST00000358485.8",
          "protein_id": "ENSP00000351273.4",
          "transcript_support_level": 1,
          "aa_start": 469,
          "aa_end": null,
          "aa_length": 538,
          "cds_start": 1405,
          "cds_end": null,
          "cds_length": 1617,
          "cdna_start": 1601,
          "cdna_end": null,
          "cdna_length": 2930,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1279_1280delGT",
          "hgvs_p": "p.Val427fs",
          "transcript": "ENST00000264275.9",
          "protein_id": "ENSP00000264275.5",
          "transcript_support_level": 1,
          "aa_start": 427,
          "aa_end": null,
          "aa_length": 496,
          "cds_start": 1279,
          "cds_end": null,
          "cds_length": 1491,
          "cdna_start": 1559,
          "cdna_end": null,
          "cdna_length": 1906,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1183_1184delGT",
          "hgvs_p": "p.Val395fs",
          "transcript": "ENST00000323492.11",
          "protein_id": "ENSP00000325722.7",
          "transcript_support_level": 1,
          "aa_start": 395,
          "aa_end": null,
          "aa_length": 464,
          "cds_start": 1183,
          "cds_end": null,
          "cds_length": 1395,
          "cdna_start": 1323,
          "cdna_end": null,
          "cdna_length": 2650,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "n.*533_*534delGT",
          "hgvs_p": null,
          "transcript": "ENST00000339403.6",
          "protein_id": "ENSP00000512271.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1723,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "n.*533_*534delGT",
          "hgvs_p": null,
          "transcript": "ENST00000339403.6",
          "protein_id": "ENSP00000512271.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1723,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1405_1406delGT",
          "hgvs_p": "p.Val469fs",
          "transcript": "NM_001080125.2",
          "protein_id": "NP_001073594.1",
          "transcript_support_level": null,
          "aa_start": 469,
          "aa_end": null,
          "aa_length": 538,
          "cds_start": 1405,
          "cds_end": null,
          "cds_length": 1617,
          "cdna_start": 1602,
          "cdna_end": null,
          "cdna_length": 2929,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1360_1361delGT",
          "hgvs_p": "p.Val454fs",
          "transcript": "NM_001400642.1",
          "protein_id": "NP_001387571.1",
          "transcript_support_level": null,
          "aa_start": 454,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1360,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1557,
          "cdna_end": null,
          "cdna_length": 2884,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1360_1361delGT",
          "hgvs_p": "p.Val454fs",
          "transcript": "ENST00000696085.1",
          "protein_id": "ENSP00000512381.1",
          "transcript_support_level": null,
          "aa_start": 454,
          "aa_end": null,
          "aa_length": 523,
          "cds_start": 1360,
          "cds_end": null,
          "cds_length": 1572,
          "cdna_start": 1482,
          "cdna_end": null,
          "cdna_length": 2749,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1279_1280delGT",
          "hgvs_p": "p.Val427fs",
          "transcript": "NM_001228.5",
          "protein_id": "NP_001219.2",
          "transcript_support_level": null,
          "aa_start": 427,
          "aa_end": null,
          "aa_length": 496,
          "cds_start": 1279,
          "cds_end": null,
          "cds_length": 1491,
          "cdna_start": 1562,
          "cdna_end": null,
          "cdna_length": 2889,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1261_1262delGT",
          "hgvs_p": "p.Val421fs",
          "transcript": "NM_001400645.1",
          "protein_id": "NP_001387574.1",
          "transcript_support_level": null,
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          "cds_start": 1261,
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          "cdna_start": 1407,
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          "mane_select": null,
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        {
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          "strand": true,
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          "exon_rank": 9,
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          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "CASP8",
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          "hgvs_c": "c.1228_1229delGT",
          "hgvs_p": "p.Val410fs",
          "transcript": "NM_001400648.1",
          "protein_id": "NP_001387577.1",
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          "cds_start": 1228,
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        {
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          ],
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          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1228_1229delGT",
          "hgvs_p": "p.Val410fs",
          "transcript": "NM_001400651.1",
          "protein_id": "NP_001387580.1",
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        {
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        {
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          "consequences": [
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          "intron_rank": null,
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          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1228_1229delGT",
          "hgvs_p": "p.Val410fs",
          "transcript": "NM_001400654.1",
          "protein_id": "NP_001387583.1",
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        {
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          "intron_rank": null,
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          "gene_symbol": "CASP8",
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        {
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          "intron_rank": null,
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          "gene_symbol": "CASP8",
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          "biotype": null,
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
          "gene_hgnc_id": 1509,
          "hgvs_c": "c.1228_1229delGT",
          "hgvs_p": "p.Val410fs",
          "transcript": "NM_033355.4",
          "protein_id": "NP_203519.1",
          "transcript_support_level": null,
          "aa_start": 410,
          "aa_end": null,
          "aa_length": 479,
          "cds_start": 1228,
          "cds_end": null,
          "cds_length": 1440,
          "cdna_start": 1417,
          "cdna_end": null,
          "cdna_length": 2744,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CASP8",
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      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 11,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5",
      "acmg_by_gene": [
        {
          "score": 11,
          "benign_score": 0,
          "pathogenic_score": 11,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5"
          ],
          "verdict": "Pathogenic",
          "transcript": "ENST00000673742.1",
          "gene_symbol": "CASP8",
          "hgnc_id": 1509,
          "effects": [
            "frameshift_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1228_1229delGT",
          "hgvs_p": "p.Val410fs"
        }
      ],
      "clinvar_disease": "Hepatocellular carcinoma",
      "clinvar_classification": "Pathogenic",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "Hepatocellular carcinoma",
      "pathogenicity_classification_combined": "Pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}