← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-205440432-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=205440432&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 205440432,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000406610.7",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2804C>T",
"hgvs_p": "p.Thr935Ile",
"transcript": "NM_001302769.2",
"protein_id": "NP_001289698.1",
"transcript_support_level": null,
"aa_start": 935,
"aa_end": null,
"aa_length": 1205,
"cds_start": 2804,
"cds_end": null,
"cds_length": 3618,
"cdna_start": 3329,
"cdna_end": null,
"cdna_length": 8492,
"mane_select": "ENST00000406610.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2804C>T",
"hgvs_p": "p.Thr935Ile",
"transcript": "ENST00000406610.7",
"protein_id": "ENSP00000385848.2",
"transcript_support_level": 1,
"aa_start": 935,
"aa_end": null,
"aa_length": 1205,
"cds_start": 2804,
"cds_end": null,
"cds_length": 3618,
"cdna_start": 3329,
"cdna_end": null,
"cdna_length": 8492,
"mane_select": "NM_001302769.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2618C>T",
"hgvs_p": "p.Thr873Ile",
"transcript": "ENST00000358768.6",
"protein_id": "ENSP00000351618.2",
"transcript_support_level": 1,
"aa_start": 873,
"aa_end": null,
"aa_length": 1143,
"cds_start": 2618,
"cds_end": null,
"cds_length": 3432,
"cdna_start": 2618,
"cdna_end": null,
"cdna_length": 3432,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2597C>T",
"hgvs_p": "p.Thr866Ile",
"transcript": "ENST00000351153.5",
"protein_id": "ENSP00000317261.2",
"transcript_support_level": 1,
"aa_start": 866,
"aa_end": null,
"aa_length": 1136,
"cds_start": 2597,
"cds_end": null,
"cds_length": 3411,
"cdna_start": 2597,
"cdna_end": null,
"cdna_length": 3411,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2741+39309C>T",
"hgvs_p": null,
"transcript": "ENST00000349953.7",
"protein_id": "ENSP00000340280.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1104,
"cds_start": -4,
"cds_end": null,
"cds_length": 3315,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3315,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2618C>T",
"hgvs_p": "p.Thr873Ile",
"transcript": "NM_152526.6",
"protein_id": "NP_689739.4",
"transcript_support_level": null,
"aa_start": 873,
"aa_end": null,
"aa_length": 1143,
"cds_start": 2618,
"cds_end": null,
"cds_length": 3432,
"cdna_start": 3143,
"cdna_end": null,
"cdna_length": 8306,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2597C>T",
"hgvs_p": "p.Thr866Ile",
"transcript": "NM_057177.7",
"protein_id": "NP_476518.4",
"transcript_support_level": null,
"aa_start": 866,
"aa_end": null,
"aa_length": 1136,
"cds_start": 2597,
"cds_end": null,
"cds_length": 3411,
"cdna_start": 3122,
"cdna_end": null,
"cdna_length": 8285,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2828C>T",
"hgvs_p": "p.Thr943Ile",
"transcript": "XM_011510552.3",
"protein_id": "XP_011508854.1",
"transcript_support_level": null,
"aa_start": 943,
"aa_end": null,
"aa_length": 1213,
"cds_start": 2828,
"cds_end": null,
"cds_length": 3642,
"cdna_start": 3356,
"cdna_end": null,
"cdna_length": 8519,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2828C>T",
"hgvs_p": "p.Thr943Ile",
"transcript": "XM_047443208.1",
"protein_id": "XP_047299164.1",
"transcript_support_level": null,
"aa_start": 943,
"aa_end": null,
"aa_length": 1213,
"cds_start": 2828,
"cds_end": null,
"cds_length": 3642,
"cdna_start": 8666,
"cdna_end": null,
"cdna_length": 13829,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2768C>T",
"hgvs_p": "p.Thr923Ile",
"transcript": "XM_017003283.2",
"protein_id": "XP_016858772.1",
"transcript_support_level": null,
"aa_start": 923,
"aa_end": null,
"aa_length": 1193,
"cds_start": 2768,
"cds_end": null,
"cds_length": 3582,
"cdna_start": 3297,
"cdna_end": null,
"cdna_length": 8460,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2738C>T",
"hgvs_p": "p.Thr913Ile",
"transcript": "XM_017003284.2",
"protein_id": "XP_016858773.1",
"transcript_support_level": null,
"aa_start": 913,
"aa_end": null,
"aa_length": 1183,
"cds_start": 2738,
"cds_end": null,
"cds_length": 3552,
"cdna_start": 14514,
"cdna_end": null,
"cdna_length": 19677,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2642C>T",
"hgvs_p": "p.Thr881Ile",
"transcript": "XM_017003285.2",
"protein_id": "XP_016858774.1",
"transcript_support_level": null,
"aa_start": 881,
"aa_end": null,
"aa_length": 1151,
"cds_start": 2642,
"cds_end": null,
"cds_length": 3456,
"cdna_start": 7899,
"cdna_end": null,
"cdna_length": 13062,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2636C>T",
"hgvs_p": "p.Thr879Ile",
"transcript": "XM_017003286.2",
"protein_id": "XP_016858775.1",
"transcript_support_level": null,
"aa_start": 879,
"aa_end": null,
"aa_length": 1149,
"cds_start": 2636,
"cds_end": null,
"cds_length": 3450,
"cdna_start": 14410,
"cdna_end": null,
"cdna_length": 19573,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2828C>T",
"hgvs_p": "p.Thr943Ile",
"transcript": "XM_017003287.2",
"protein_id": "XP_016858776.1",
"transcript_support_level": null,
"aa_start": 943,
"aa_end": null,
"aa_length": 1127,
"cds_start": 2828,
"cds_end": null,
"cds_length": 3384,
"cdna_start": 8083,
"cdna_end": null,
"cdna_length": 8865,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2450C>T",
"hgvs_p": "p.Thr817Ile",
"transcript": "XM_047443209.1",
"protein_id": "XP_047299165.1",
"transcript_support_level": null,
"aa_start": 817,
"aa_end": null,
"aa_length": 1087,
"cds_start": 2450,
"cds_end": null,
"cds_length": 3264,
"cdna_start": 14225,
"cdna_end": null,
"cdna_length": 19388,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2303C>T",
"hgvs_p": "p.Thr768Ile",
"transcript": "XM_017003289.1",
"protein_id": "XP_016858778.1",
"transcript_support_level": null,
"aa_start": 768,
"aa_end": null,
"aa_length": 1038,
"cds_start": 2303,
"cds_end": null,
"cds_length": 3117,
"cdna_start": 2458,
"cdna_end": null,
"cdna_length": 7621,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2207C>T",
"hgvs_p": "p.Thr736Ile",
"transcript": "XM_017003292.2",
"protein_id": "XP_016858781.1",
"transcript_support_level": null,
"aa_start": 736,
"aa_end": null,
"aa_length": 1006,
"cds_start": 2207,
"cds_end": null,
"cds_length": 3021,
"cdna_start": 2895,
"cdna_end": null,
"cdna_length": 8058,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2207C>T",
"hgvs_p": "p.Thr736Ile",
"transcript": "XM_017003293.2",
"protein_id": "XP_016858782.1",
"transcript_support_level": null,
"aa_start": 736,
"aa_end": null,
"aa_length": 1006,
"cds_start": 2207,
"cds_end": null,
"cds_length": 3021,
"cdna_start": 2384,
"cdna_end": null,
"cdna_length": 7547,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "n.537C>T",
"hgvs_p": null,
"transcript": "ENST00000494482.1",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 576,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2741+39309C>T",
"hgvs_p": null,
"transcript": "NM_205863.4",
"protein_id": "NP_995585.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1104,
"cds_start": -4,
"cds_end": null,
"cds_length": 3315,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8189,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"hgvs_c": "c.2765+39309C>T",
"hgvs_p": null,
"transcript": "XM_017003288.2",
"protein_id": "XP_016858777.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1112,
"cds_start": -4,
"cds_end": null,
"cds_length": 3339,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 12944,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "PARD3B",
"gene_hgnc_id": 14446,
"dbsnp": "rs10185378",
"frequency_reference_population": 0.06582781,
"hom_count_reference_population": 4312,
"allele_count_reference_population": 106242,
"gnomad_exomes_af": 0.0630463,
"gnomad_genomes_af": 0.0925415,
"gnomad_exomes_ac": 92157,
"gnomad_genomes_ac": 14085,
"gnomad_exomes_homalt": 3426,
"gnomad_genomes_homalt": 886,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.0017732083797454834,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.089,
"revel_prediction": "Benign",
"alphamissense_score": 0.1361,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.67,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.842,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000406610.7",
"gene_symbol": "PARD3B",
"hgnc_id": 14446,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.2804C>T",
"hgvs_p": "p.Thr935Ile"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}