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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-209684454-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=209684454&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 209684454,
"ref": "C",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000682079.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "NM_001375505.1",
"protein_id": "NP_001362434.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1827,
"cds_start": -4,
"cds_end": null,
"cds_length": 5484,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9650,
"mane_select": "ENST00000682079.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "ENST00000682079.1",
"protein_id": "ENSP00000507035.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1827,
"cds_start": -4,
"cds_end": null,
"cds_length": 5484,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9650,
"mane_select": "NM_001375505.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "ENST00000447185.5",
"protein_id": "ENSP00000392164.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1823,
"cds_start": -4,
"cds_end": null,
"cds_length": 5472,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5472,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "ENST00000199940.10",
"protein_id": "ENSP00000199940.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 559,
"cds_start": -4,
"cds_end": null,
"cds_length": 1680,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2241,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "ENST00000361559.8",
"protein_id": "ENSP00000355290.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 471,
"cds_start": -4,
"cds_end": null,
"cds_length": 1416,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2038,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "ENST00000392194.5",
"protein_id": "ENSP00000376032.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 471,
"cds_start": -4,
"cds_end": null,
"cds_length": 1416,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5303,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.455-3265C>G",
"hgvs_p": null,
"transcript": "ENST00000673860.1",
"protein_id": "ENSP00000501117.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1990,
"cds_start": -4,
"cds_end": null,
"cds_length": 5973,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10012,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "NM_001375504.1",
"protein_id": "NP_001362433.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1915,
"cds_start": -4,
"cds_end": null,
"cds_length": 5748,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9914,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "NM_001375501.1",
"protein_id": "NP_001362430.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1909,
"cds_start": -4,
"cds_end": null,
"cds_length": 5730,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9896,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "NM_001375537.1",
"protein_id": "NP_001362466.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1909,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 9765,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "NM_001375531.1",
"protein_id": "NP_001362460.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 6,
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"gene_symbol": "MAP2",
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"hgvs_c": "c.454+3627C>G",
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"transcript": "NM_001375539.1",
"protein_id": "NP_001362468.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 17,
"intron_rank": 7,
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"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
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"transcript": "NM_001375503.1",
"protein_id": "NP_001362432.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "MAP2",
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"hgvs_c": "c.454+3627C>G",
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"transcript": "NM_001437615.1",
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},
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],
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},
{
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"strand": true,
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],
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"intron_rank": 7,
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"gene_symbol": "MAP2",
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"hgvs_c": "c.454+3627C>G",
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"transcript": "ENST00000704357.1",
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},
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],
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"hgvs_c": "c.454+3627C>G",
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"transcript": "NM_001437617.1",
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},
{
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"strand": true,
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],
"exon_rank": null,
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"intron_rank": 6,
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"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.454+3627C>G",
"hgvs_p": null,
"transcript": "NM_001375526.1",
"protein_id": "NP_001362455.1",
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},
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 7,
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"gene_symbol": "MAP2",
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"hgvs_c": "c.454+3627C>G",
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"transcript": "NM_001375534.1",
"protein_id": "NP_001362463.1",
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},
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],
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"gene_symbol": "MAP2",
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"transcript": "NM_002374.4",
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},
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],
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"gene_symbol": "MAP2",
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},
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 6,
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"gene_symbol": "MAP2",
"gene_hgnc_id": 6839,
"hgvs_c": "c.451+3627C>G",
"hgvs_p": null,
"transcript": "NM_001375502.1",
"protein_id": "NP_001362431.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAP2",
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"hgvs_c": "c.454+3627C>G",
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"transcript": "NM_001375506.1",
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}
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}